-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_26/scaffold_26_7171159-7345039

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_56035-T1
Valid prediction for GlimmerHMM_glimmerT_56059-T1
Valid prediction for snap_scaffold_26-snap.1666-T1
Valid prediction for snap_scaffold_26-snap.1670-T1
Valid prediction for GlimmerHMM_glimmerT_56033-T1
Valid prediction for snap_scaffold_26-snap.1668-T1
Sorry, intron length (6) is less than minimum required (10)
Valid prediction for Augustus_model.g37149.t1
Valid prediction for snap_scaffold_26-snap.1696-T1
Valid prediction for snap_scaffold_26-snap.1684-T1
Valid prediction for snap_scaffold_26-snap.1688-T1
Valid prediction for snap_scaffold_26-snap.1693-T1
Valid prediction for snap_scaffold_26-snap.1700-T1
Valid prediction for snap_scaffold_26-snap.1683-T1
Valid prediction for GlimmerHMM_glimmerT_56054-T1
Valid prediction for snap_scaffold_26-snap.1680-T1
Valid prediction for snap_scaffold_26-snap.1695-T1
Valid prediction for GlimmerHMM_glimmerT_56056-T1
Valid prediction for snap_scaffold_26-snap.1673-T1
Valid prediction for Augustus_model.g37137.t1
Valid prediction for snap_scaffold_26-snap.1685-T1
Valid prediction for Augustus_model.g37148.t1
Valid prediction for GlimmerHMM_glimmerT_56039-T1
Valid prediction for snap_scaffold_26-snap.1669-T1
Valid prediction for GlimmerHMM_glimmerT_56062-T1
Valid prediction for Augustus_model.g37147.t1
Valid prediction for snap_scaffold_26-snap.1674-T1
Valid prediction for GlimmerHMM_glimmerT_56042-T1
Valid prediction for GlimmerHMM_glimmerT_56057-T1
Valid prediction for GlimmerHMM_glimmerT_56036-T1
Valid prediction for GlimmerHMM_glimmerT_56049-T1
Valid prediction for snap_scaffold_26-snap.1660-T1
Valid prediction for GlimmerHMM_glimmerT_56037-T1
Valid prediction for snap_scaffold_26-snap.1675-T1
Valid prediction for GlimmerHMM_glimmerT_56048-T1
Valid prediction for snap_scaffold_26-snap.1671-T1
Valid prediction for snap_scaffold_26-snap.1681-T1
Valid prediction for snap_scaffold_26-snap.1664-T1
Valid prediction for Augustus_model.g37140.t1
Valid prediction for GlimmerHMM_glimmerT_56052-T1
Valid prediction for Augustus_model.g37143.t1
Valid prediction for GlimmerHMM_glimmerT_56045-T1
Valid prediction for snap_scaffold_26-snap.1678-T1
Valid prediction for snap_scaffold_26-snap.1661-T1
Valid prediction for snap_scaffold_26-snap.1701-T1
Valid prediction for snap_scaffold_26-snap.1659-T1
Valid prediction for snap_scaffold_26-snap.1697-T1
Sorry, intron length (8) is less than minimum required (10)
Sorry, intron length (9) is less than minimum required (10)
Valid prediction for snap_scaffold_26-snap.1690-T1
Valid prediction for GlimmerHMM_glimmerT_56055-T1
Valid prediction for Augustus_model.g37134.t1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_56058-T1
Valid prediction for snap_scaffold_26-snap.1658-T1
Valid prediction for snap_scaffold_26-snap.1662-T1
Valid prediction for Augustus_model.g37136.t1
Valid prediction for snap_scaffold_26-snap.1699-T1
Valid prediction for Augustus_model.g37151.t1
Valid prediction for GlimmerHMM_glimmerT_56053-T1
Valid prediction for GlimmerHMM_glimmerT_56044-T1
Valid prediction for GlimmerHMM_glimmerT_56047-T1
Valid prediction for Augustus_model.g37133.t1
Valid prediction for GlimmerHMM_glimmerT_56043-T1
Valid prediction for Augustus_model.g37139.t1
Valid prediction for snap_scaffold_26-snap.1677-T1
Valid prediction for snap_scaffold_26-snap.1679-T1
Valid prediction for Augustus_model.g37141.t1
Valid prediction for GlimmerHMM_glimmerT_56038-T1
Valid prediction for GlimmerHMM_glimmerT_56051-T1
Valid prediction for GlimmerHMM_glimmerT_56046-T1
Valid prediction for snap_scaffold_26-snap.1663-T1
Valid prediction for snap_scaffold_26-snap.1676-T1
Valid prediction for GlimmerHMM_glimmerT_56064-T1
Valid prediction for snap_scaffold_26-snap.1686-T1
Valid prediction for GlimmerHMM_glimmerT_56050-T1
Valid prediction for GlimmerHMM_glimmerT_56032-T1
Valid prediction for Augustus_model.g37144.t1
Valid prediction for Augustus_model.g37154.t1
Valid prediction for snap_scaffold_26-snap.1672-T1
Valid prediction for snap_scaffold_26-snap.1691-T1
Valid prediction for snap_scaffold_26-snap.1665-T1
Valid prediction for snap_scaffold_26-snap.1667-T1
Valid prediction for Augustus_model.g37153.t1
Valid prediction for snap_scaffold_26-snap.1698-T1
Valid prediction for Augustus_model.g37146.t1
Valid prediction for Augustus_model.g37142.t1
Valid prediction for Augustus_model.g37138.t1
Valid prediction for GlimmerHMM_glimmerT_56034-T1
Valid prediction for snap_scaffold_26-snap.1694-T1
Valid prediction for Augustus_model.g37135.t1
Valid prediction for GlimmerHMM_glimmerT_56060-T1
Valid prediction for snap_scaffold_26-snap.1692-T1
Valid prediction for Augustus_model.g37150.t1
Valid prediction for Augustus_model.g37152.t1
Valid prediction for GlimmerHMM_glimmerT_56061-T1
Valid prediction for Augustus_model.g37145.t1
Valid prediction for snap_scaffold_26-snap.1689-T1
Valid prediction for snap_scaffold_26-snap.1682-T1
Valid prediction for GlimmerHMM_glimmerT_56040-T1
Valid prediction for GlimmerHMM_glimmerT_56065-T1
Valid prediction for GlimmerHMM_glimmerT_56063-T1
Valid prediction for snap_scaffold_26-snap.1687-T1
Valid prediction for GlimmerHMM_glimmerT_56041-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 22498, rend_intergenic: 5713  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 33211, rend_intergenic: 29833  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 36894, rend_intergenic: 33297  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 39158, rend_intergenic: 37126  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 40267, rend_intergenic: 39538  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 68817, rend_intergenic: 41758  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 80628, rend_intergenic: 76040  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 89937, rend_intergenic: 82518  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 97890, rend_intergenic: 91379  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 101792, rend_intergenic: 98059  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 104420, rend_intergenic: 102071  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 120924, rend_intergenic: 110539  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 123086, rend_intergenic: 120937  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 127542, rend_intergenic: 123938  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 132052, rend_intergenic: 129385  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 134384, rend_intergenic: 133630  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 145222, rend_intergenic: 141469  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 148052, rend_intergenic: 145256  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 155914, rend_intergenic: 150685  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 164589, rend_intergenic: 161431  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 171979, rend_intergenic: 167068  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 173881
-exon list size: 439


building trellis

0.2    
0.5    
0.7    
0.9    
1.1    
1.4    
1.6    
1.8    
2.0    
2.3    
2.5    
2.7    
2.9    
3.2    
3.4    
3.6    
3.9    
4.1    
4.3    
4.5    
4.8    
5.0    
5.2    
5.4    
5.7    
5.9    
6.1    
6.3    
6.6    
6.8    
7.0    
7.3    
7.5    
7.7    
7.9    
8.2    
8.4    
8.6    
8.8    
9.1    
9.3    
9.5    
9.8    
10.0    
10.2    
10.4    
10.7    
10.9    
11.1    
11.3    
11.6    
11.8    
12.0    
12.2    
12.5    
12.7    
12.9    
13.2    
13.4    
13.6    
13.8    
14.1    
14.3    
14.5    
14.7    
15.0    
15.2    
15.4    
15.6    
15.9    
16.1    
16.3    
16.6    
16.8    
17.0    
17.2    
17.5    
17.7    
17.9    
18.1    
18.4    
18.6    
18.8    
19.0    
19.3    
19.5    
19.7    
20.0    
20.2    
20.4    
20.6    
20.9    
21.1    
21.3    
21.5    
21.8    
22.0    
22.2    
22.4    
22.7    
22.9    
23.1    
23.4    
23.6    
23.8    
24.0    
24.3    
24.5    
24.7    
24.9    
25.2    
25.4    
25.6    
25.9    
26.1    
26.3    
26.5    
26.8    
27.0    
27.2    
27.4    
27.7    
27.9    
28.1    
28.3    
28.6    
28.8    
29.0    
29.3    
29.5    
29.7    
29.9    
30.2    
30.4    
30.6    
30.8    
31.1    
31.3    
31.5    
31.7    
32.0    
32.2    
32.4    
32.7    
32.9    
33.1    
33.3    
33.6    
33.8    
34.0    
34.2    
34.5    
34.7    
34.9    
35.1    
35.4    
35.6    
35.8    
36.1    
36.3    
36.5    
36.7    
37.0    
37.2    
37.4    
37.6    
37.9    
38.1    
38.3    
38.5    
38.8    
39.0    
39.2    
39.5    
39.7    
39.9    
40.1    
40.4    
40.6    
40.8    
41.0    
41.3    
41.5    
41.7    
42.0    
42.2    
42.4    
42.6    
42.9    
43.1    
43.3    
43.5    
43.8    
44.0    
44.2    
44.4    
44.7    
44.9    
45.1    
45.4    
45.6    
45.8    
46.0    
46.3    
46.5    
46.7    
46.9    
47.2    
47.4    
47.6    
47.8    
48.1    
48.3    
48.5    
48.8    
49.0    
49.2    
49.4    
49.7    
49.9    
50.1    
50.3    
50.6    
50.8    
51.0    
51.2    
51.5    
51.7    
51.9    
52.2    
52.4    
52.6    
52.8    
53.1    
53.3    
53.5    
53.7    
54.0    
54.2    
54.4    
54.6    
54.9    
55.1    
55.3    
55.6    
55.8    
56.0    
56.2    
56.5    
56.7    
56.9    
57.1    
57.4    
57.6    
57.8    
58.0    
58.3    
58.5    
58.7    
59.0    
59.2    
59.4    
59.6    
59.9    
60.1    
60.3    
60.5    
60.8    
61.0    
61.2    
61.5    
61.7    
61.9    
62.1    
62.4    
62.6    
62.8    
63.0    
63.3    
63.5    
63.7    
63.9    
64.2    
64.4    
64.6    
64.9    
65.1    
65.3    
65.5    
65.8    
66.0    
66.2    
66.4    
66.7    
66.9    
67.1    
67.3    
67.6    
67.8    
68.0    
68.3    
68.5    
68.7    
68.9    
69.2    
69.4    
69.6    
69.8    
70.1    
70.3    
70.5    
70.7    
71.0    
71.2    
71.4    
71.7    
71.9    
72.1    
72.3    
72.6    
72.8    
73.0    
73.2    
73.5    
73.7    
73.9    
74.1    
74.4    
74.6    
74.8    
75.1    
75.3    
75.5    
75.7    
76.0    
76.2    
76.4    
76.6    
76.9    
77.1    
77.3    
77.6    
77.8    
78.0    
78.2    
78.5    
78.7    
78.9    
79.1    
79.4    
79.6    
79.8    
80.0    
80.3    
80.5    
80.7    
81.0    
81.2    
81.4    
81.6    
81.9    
82.1    
82.3    
82.5    
82.8    
83.0    
83.2    
83.4    
83.7    
83.9    
84.1    
84.4    
84.6    
84.8    
85.0    
85.3    
85.5    
85.7    
85.9    
86.2    
86.4    
86.6    
86.8    
87.1    
87.3    
87.5    
87.8    
88.0    
88.2    
88.4    
88.7    
88.9    
89.1    
89.3    
89.6    
89.8    
90.0    
90.2    
90.5    
90.7    
90.9    
91.2    
91.4    
91.6    
91.8    
92.1    
92.3    
92.5    
92.7    
93.0    
93.2    
93.4    
93.7    
93.9    
94.1    
94.3    
94.6    
94.8    
95.0    
95.2    
95.5    
95.7    
95.9    
96.1    
96.4    
96.6    
96.8    
97.1    
97.3    
97.5    
97.7    
98.0    
98.2    
98.4    
98.6    
98.9    
99.1    
99.3    
99.5    
99.8    
-found 36 predictions from path traversal
Error with prediction: snap lend_intergenic: 22498, rend_intergenic: 5713  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 33211, rend_intergenic: 29833  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 36894, rend_intergenic: 33297  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 39158, rend_intergenic: 37126  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 40267, rend_intergenic: 39538  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 68817, rend_intergenic: 41758  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 80628, rend_intergenic: 76040  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 89937, rend_intergenic: 82518  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 97890, rend_intergenic: 91379  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 101792, rend_intergenic: 98059  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 104420, rend_intergenic: 102071  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 120924, rend_intergenic: 110539  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 123086, rend_intergenic: 120937  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 127542, rend_intergenic: 123938  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 132052, rend_intergenic: 129385  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 134384, rend_intergenic: 133630  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 145222, rend_intergenic: 141469  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 148052, rend_intergenic: 145256  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 155914, rend_intergenic: 150685  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 164589, rend_intergenic: 161431  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 171979, rend_intergenic: 167068  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 19 predictions persist after filtering for low support