-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_26/scaffold_26_6957112-7172772

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_26-snap.1626-T1
Valid prediction for GlimmerHMM_glimmerT_56019-T1
Valid prediction for GlimmerHMM_glimmerT_56005-T1
Valid prediction for Augustus_model.g37127.t1
Valid prediction for snap_scaffold_26-snap.1649-T1
Valid prediction for snap_scaffold_26-snap.1637-T1
Valid prediction for GlimmerHMM_glimmerT_56022-T1
Valid prediction for Augustus_model.g37130.t1
Valid prediction for snap_scaffold_26-snap.1615-T1
Valid prediction for snap_scaffold_26-snap.1608-T1
Valid prediction for GlimmerHMM_glimmerT_56028-T1
Valid prediction for snap_scaffold_26-snap.1620-T1
Valid prediction for Augustus_model.g37121.t1
Valid prediction for GlimmerHMM_glimmerT_56000-T1
Valid prediction for snap_scaffold_26-snap.1633-T1
Valid prediction for snap_scaffold_26-snap.1636-T1
Valid prediction for GlimmerHMM_glimmerT_55991-T1
Valid prediction for GlimmerHMM_glimmerT_56025-T1
Valid prediction for snap_scaffold_26-snap.1614-T1
Valid prediction for GlimmerHMM_glimmerT_56007-T1
Valid prediction for GlimmerHMM_glimmerT_56013-T1
Valid prediction for snap_scaffold_26-snap.1631-T1
Valid prediction for GlimmerHMM_glimmerT_55997-T1
Valid prediction for GlimmerHMM_glimmerT_56015-T1
Valid prediction for GlimmerHMM_glimmerT_56029-T1
Valid prediction for snap_scaffold_26-snap.1617-T1
Valid prediction for GlimmerHMM_glimmerT_56001-T1
Valid prediction for Augustus_model.g37119.t1
Valid prediction for snap_scaffold_26-snap.1624-T1
Valid prediction for snap_scaffold_26-snap.1612-T1
Valid prediction for snap_scaffold_26-snap.1645-T1
Valid prediction for snap_scaffold_26-snap.1640-T1
Valid prediction for snap_scaffold_26-snap.1652-T1
Valid prediction for snap_scaffold_26-snap.1606-T1
Valid prediction for Augustus_model.g37118.t1
Valid prediction for snap_scaffold_26-snap.1642-T1
Valid prediction for snap_scaffold_26-snap.1638-T1
Sorry, intron length (3) is less than minimum required (10)
Valid prediction for Augustus_model.g37113.t1
Valid prediction for snap_scaffold_26-snap.1604-T1
Valid prediction for GlimmerHMM_glimmerT_56018-T1
Valid prediction for snap_scaffold_26-snap.1618-T1
Valid prediction for GlimmerHMM_glimmerT_56026-T1
Valid prediction for Augustus_model.g37128.t1
Valid prediction for GlimmerHMM_glimmerT_55992-T1
Valid prediction for Augustus_model.g37124.t1
Valid prediction for snap_scaffold_26-snap.1610-T1
Valid prediction for snap_scaffold_26-snap.1654-T1
Valid prediction for Augustus_model.g37112.t1
Valid prediction for Augustus_model.g37122.t1
Valid prediction for Augustus_model.g37125.t1
Valid prediction for snap_scaffold_26-snap.1634-T1
Valid prediction for GlimmerHMM_glimmerT_56010-T1
Valid prediction for GlimmerHMM_glimmerT_56016-T1
Valid prediction for Augustus_model.g37114.t1
Valid prediction for snap_scaffold_26-snap.1650-T1
Valid prediction for GlimmerHMM_glimmerT_56014-T1
Valid prediction for GlimmerHMM_glimmerT_56017-T1
Valid prediction for snap_scaffold_26-snap.1629-T1
Valid prediction for GlimmerHMM_glimmerT_56009-T1
Valid prediction for GlimmerHMM_glimmerT_55989-T1
Valid prediction for snap_scaffold_26-snap.1630-T1
Valid prediction for snap_scaffold_26-snap.1651-T1
Valid prediction for GlimmerHMM_glimmerT_55988-T1
Valid prediction for snap_scaffold_26-snap.1647-T1
Valid prediction for Augustus_model.g37126.t1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for Augustus_model.g37116.t1
Valid prediction for snap_scaffold_26-snap.1643-T1
Valid prediction for snap_scaffold_26-snap.1653-T1
Valid prediction for snap_scaffold_26-snap.1632-T1
Valid prediction for snap_scaffold_26-snap.1657-T1
Valid prediction for snap_scaffold_26-snap.1621-T1
Valid prediction for GlimmerHMM_glimmerT_56027-T1
Valid prediction for GlimmerHMM_glimmerT_55998-T1
Valid prediction for GlimmerHMM_glimmerT_55987-T1
Valid prediction for GlimmerHMM_glimmerT_55993-T1
Valid prediction for GlimmerHMM_glimmerT_56024-T1
Valid prediction for GlimmerHMM_glimmerT_55986-T1
Valid prediction for GlimmerHMM_glimmerT_56006-T1
Valid prediction for Augustus_model.g37131.t1
Valid prediction for snap_scaffold_26-snap.1613-T1
Valid prediction for GlimmerHMM_glimmerT_55994-T1
Valid prediction for GlimmerHMM_glimmerT_55995-T1
Valid prediction for snap_scaffold_26-snap.1627-T1
Valid prediction for snap_scaffold_26-snap.1607-T1
Valid prediction for snap_scaffold_26-snap.1648-T1
Valid prediction for snap_scaffold_26-snap.1655-T1
Valid prediction for snap_scaffold_26-snap.1625-T1
Valid prediction for GlimmerHMM_glimmerT_56023-T1
Valid prediction for Augustus_model.g37111.t1
Valid prediction for Augustus_model.g37120.t1
Valid prediction for GlimmerHMM_glimmerT_56008-T1
Valid prediction for snap_scaffold_26-snap.1628-T1
Valid prediction for GlimmerHMM_glimmerT_56002-T1
Valid prediction for snap_scaffold_26-snap.1646-T1
Valid prediction for Augustus_model.g37123.t1
Valid prediction for GlimmerHMM_glimmerT_55990-T1
Valid prediction for GlimmerHMM_glimmerT_56031-T1
Valid prediction for snap_scaffold_26-snap.1644-T1
Valid prediction for Augustus_model.g37117.t1
Valid prediction for GlimmerHMM_glimmerT_56030-T1
Valid prediction for snap_scaffold_26-snap.1611-T1
Valid prediction for Augustus_model.g37129.t1
Valid prediction for snap_scaffold_26-snap.1623-T1
Valid prediction for GlimmerHMM_glimmerT_56020-T1
Valid prediction for GlimmerHMM_glimmerT_56021-T1
Valid prediction for snap_scaffold_26-snap.1639-T1
Valid prediction for GlimmerHMM_glimmerT_56004-T1
Valid prediction for GlimmerHMM_glimmerT_55999-T1
Valid prediction for snap_scaffold_26-snap.1605-T1
Valid prediction for snap_scaffold_26-snap.1622-T1
Sorry, intron length (3) is less than minimum required (10)
Valid prediction for snap_scaffold_26-snap.1619-T1
Valid prediction for snap_scaffold_26-snap.1616-T1
Valid prediction for snap_scaffold_26-snap.1609-T1
Valid prediction for snap_scaffold_26-snap.1635-T1
Valid prediction for GlimmerHMM_glimmerT_55996-T1
Valid prediction for GlimmerHMM_glimmerT_56011-T1
Valid prediction for Augustus_model.g37132.t1
Valid prediction for snap_scaffold_26-snap.1641-T1
Valid prediction for GlimmerHMM_glimmerT_56003-T1
Valid prediction for Augustus_model.g37115.t1
Valid prediction for GlimmerHMM_glimmerT_56012-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 4404, rend_intergenic: 2523  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 13978, rend_intergenic: 5152  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 15798, rend_intergenic: 14047  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 21036, rend_intergenic: 16057  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 24084, rend_intergenic: 21070  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 32073, rend_intergenic: 24406  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 39092, rend_intergenic: 32539  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 44965, rend_intergenic: 42456  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 50666, rend_intergenic: 45961  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 62227, rend_intergenic: 61584  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 64137, rend_intergenic: 62363  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 68709, rend_intergenic: 67431  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 69504, rend_intergenic: 68851  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 75296, rend_intergenic: 72940  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 91916, rend_intergenic: 85537  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 104122, rend_intergenic: 103031  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 152682, rend_intergenic: 149240  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 156993, rend_intergenic: 153293  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 160496, rend_intergenic: 157157  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 170698, rend_intergenic: 167625  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 197309, rend_intergenic: 182285  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 203824, rend_intergenic: 201374  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 204381, rend_intergenic: 204133  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: GlimmerHMM lend_intergenic: 23281, rend_intergenic: 23278  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 215661
-exon list size: 444


building trellis

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1.1    
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20.0    
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22.0    
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22.6    
22.9    
23.1    
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23.5    
23.8    
24.0    
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24.4    
24.7    
24.9    
25.1    
25.3    
25.6    
25.8    
26.0    
26.2    
26.5    
26.7    
26.9    
27.1    
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27.6    
27.8    
28.0    
28.3    
28.5    
28.7    
28.9    
29.1    
29.4    
29.6    
29.8    
30.0    
30.3    
30.5    
30.7    
30.9    
31.2    
31.4    
31.6    
31.8    
32.1    
32.3    
32.5    
32.7    
33.0    
33.2    
33.4    
33.6    
33.9    
34.1    
34.3    
34.5    
34.8    
35.0    
35.2    
35.4    
35.7    
35.9    
36.1    
36.3    
36.5    
36.8    
37.0    
37.2    
37.4    
37.7    
37.9    
38.1    
38.3    
38.6    
38.8    
39.0    
39.2    
39.5    
39.7    
39.9    
40.1    
40.4    
40.6    
40.8    
41.0    
41.3    
41.5    
41.7    
41.9    
42.2    
42.4    
42.6    
42.8    
43.0    
43.3    
43.5    
43.7    
43.9    
44.2    
44.4    
44.6    
44.8    
45.1    
45.3    
45.5    
45.7    
46.0    
46.2    
46.4    
46.6    
46.9    
47.1    
47.3    
47.5    
47.8    
48.0    
48.2    
48.4    
48.7    
48.9    
49.1    
49.3    
49.6    
49.8    
50.0    
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50.4    
50.7    
50.9    
51.1    
51.3    
51.6    
51.8    
52.0    
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52.5    
52.7    
52.9    
53.1    
53.4    
53.6    
53.8    
54.0    
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54.9    
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55.8    
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59.0    
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59.9    
60.1    
60.3    
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61.9    
62.1    
62.3    
62.6    
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63.0    
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63.9    
64.1    
64.3    
64.6    
64.8    
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65.2    
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66.1    
66.4    
66.6    
66.8    
67.0    
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68.8    
69.1    
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70.9    
71.1    
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72.0    
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72.9    
73.1    
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73.8    
74.0    
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75.6    
75.8    
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76.9    
77.1    
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77.8    
78.0    
78.3    
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78.7    
78.9    
79.1    
79.4    
79.6    
79.8    
80.0    
80.3    
80.5    
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80.9    
81.2    
81.4    
81.6    
81.8    
82.1    
82.3    
82.5    
82.7    
83.0    
83.2    
83.4    
83.6    
83.9    
84.1    
84.3    
84.5    
84.8    
85.0    
85.2    
85.4    
85.7    
85.9    
86.1    
86.3    
86.5    
86.8    
87.0    
87.2    
87.4    
87.7    
87.9    
88.1    
88.3    
88.6    
88.8    
89.0    
89.2    
89.5    
89.7    
89.9    
90.1    
90.4    
90.6    
90.8    
91.0    
91.3    
91.5    
91.7    
91.9    
92.2    
92.4    
92.6    
92.8    
93.0    
93.3    
93.5    
93.7    
93.9    
94.2    
94.4    
94.6    
94.8    
95.1    
95.3    
95.5    
95.7    
96.0    
96.2    
96.4    
96.6    
96.9    
97.1    
97.3    
97.5    
97.8    
98.0    
98.2    
98.4    
98.7    
98.9    
99.1    
99.3    
99.6    
99.8    
-found 40 predictions from path traversal
Error with prediction: snap lend_intergenic: 4404, rend_intergenic: 2523  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 13978, rend_intergenic: 5152  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 15798, rend_intergenic: 14047  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 21036, rend_intergenic: 16057  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 24084, rend_intergenic: 21070  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 32073, rend_intergenic: 24406  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 39092, rend_intergenic: 32539  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 44965, rend_intergenic: 42456  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 50666, rend_intergenic: 45961  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 62227, rend_intergenic: 61584  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 64137, rend_intergenic: 62363  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 68709, rend_intergenic: 67431  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 69504, rend_intergenic: 68851  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 75296, rend_intergenic: 72940  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 91916, rend_intergenic: 85537  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 104122, rend_intergenic: 103031  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 152682, rend_intergenic: 149240  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 156993, rend_intergenic: 153293  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 160496, rend_intergenic: 157157  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 170698, rend_intergenic: 167625  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 197309, rend_intergenic: 182285  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 203824, rend_intergenic: 201374  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 204381, rend_intergenic: 204133  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: GlimmerHMM lend_intergenic: 23281, rend_intergenic: 23278  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 20 predictions persist after filtering for low support