-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_26/scaffold_26_6861588-6959112

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_55969-T1
Valid prediction for snap_scaffold_26-snap.1598-T1
Valid prediction for GlimmerHMM_glimmerT_55975-T1
Valid prediction for GlimmerHMM_glimmerT_55968-T1
Valid prediction for snap_scaffold_26-snap.1594-T1
Valid prediction for snap_scaffold_26-snap.1599-T1
Valid prediction for GlimmerHMM_glimmerT_55978-T1
Valid prediction for snap_scaffold_26-snap.1590-T1
Valid prediction for GlimmerHMM_glimmerT_55981-T1
Valid prediction for GlimmerHMM_glimmerT_55966-T1
Valid prediction for snap_scaffold_26-snap.1600-T1
Valid prediction for Augustus_model.g37104.t1
Valid prediction for Augustus_model.g37109.t1
Valid prediction for snap_scaffold_26-snap.1593-T1
Valid prediction for Augustus_model.g37098.t1
Valid prediction for Augustus_model.g37101.t1
Valid prediction for Augustus_model.g37102.t1
Valid prediction for GlimmerHMM_glimmerT_55980-T1
Valid prediction for GlimmerHMM_glimmerT_55970-T1
Valid prediction for snap_scaffold_26-snap.1578-T1
Sorry, intron length (4) is less than minimum required (10)
Valid prediction for snap_scaffold_26-snap.1581-T1
Valid prediction for GlimmerHMM_glimmerT_55984-T1
Valid prediction for snap_scaffold_26-snap.1582-T1
Valid prediction for snap_scaffold_26-snap.1595-T1
Valid prediction for Augustus_model.g37105.t1
Valid prediction for Augustus_model.g37103.t1
Valid prediction for Augustus_model.g37106.t1
Valid prediction for snap_scaffold_26-snap.1604-T1
Valid prediction for snap_scaffold_26-snap.1585-T1
Valid prediction for Augustus_model.g37107.t1
Valid prediction for GlimmerHMM_glimmerT_55977-T1
Valid prediction for snap_scaffold_26-snap.1601-T1
Valid prediction for snap_scaffold_26-snap.1592-T1
Valid prediction for Augustus_model.g37099.t1
Valid prediction for snap_scaffold_26-snap.1580-T1
Valid prediction for snap_scaffold_26-snap.1586-T1
Valid prediction for snap_scaffold_26-snap.1584-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_26-snap.1583-T1
Valid prediction for snap_scaffold_26-snap.1591-T1
Valid prediction for GlimmerHMM_glimmerT_55971-T1
Valid prediction for GlimmerHMM_glimmerT_55979-T1
Valid prediction for snap_scaffold_26-snap.1589-T1
Sorry, intron length (4) is less than minimum required (10)
Valid prediction for Augustus_model.g37110.t1
Valid prediction for GlimmerHMM_glimmerT_55976-T1
Valid prediction for snap_scaffold_26-snap.1603-T1
Valid prediction for GlimmerHMM_glimmerT_55974-T1
Valid prediction for Augustus_model.g37100.t1
Valid prediction for Augustus_model.g37097.t1
Valid prediction for GlimmerHMM_glimmerT_55983-T1
Valid prediction for snap_scaffold_26-snap.1588-T1
Valid prediction for snap_scaffold_26-snap.1602-T1
Valid prediction for snap_scaffold_26-snap.1587-T1
Valid prediction for GlimmerHMM_glimmerT_55972-T1
Valid prediction for Augustus_model.g37108.t1
Valid prediction for GlimmerHMM_glimmerT_55967-T1
Valid prediction for GlimmerHMM_glimmerT_55982-T1
Valid prediction for snap_scaffold_26-snap.1597-T1
Valid prediction for snap_scaffold_26-snap.1577-T1
Valid prediction for GlimmerHMM_glimmerT_55965-T1
Valid prediction for snap_scaffold_26-snap.1596-T1
Valid prediction for GlimmerHMM_glimmerT_55973-T1
Valid prediction for snap_scaffold_26-snap.1579-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 5930, rend_intergenic: 2598  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 30902, rend_intergenic: 30649  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 35258, rend_intergenic: 31092  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 72980, rend_intergenic: 70732  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 92086, rend_intergenic: 85704  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 97525
-exon list size: 176


building trellis

0.6    
1.1    
1.7    
2.2    
2.8    
3.4    
3.9    
4.5    
5.1    
5.6    
6.2    
6.7    
7.3    
7.9    
8.4    
9.0    
9.6    
10.1    
10.7    
11.2    
11.8    
12.4    
12.9    
13.5    
14.0    
14.6    
15.2    
15.7    
16.3    
16.9    
17.4    
18.0    
18.5    
19.1    
19.7    
20.2    
20.8    
21.3    
21.9    
22.5    
23.0    
23.6    
24.2    
24.7    
25.3    
25.8    
26.4    
27.0    
27.5    
28.1    
28.7    
29.2    
29.8    
30.3    
30.9    
31.5    
32.0    
32.6    
33.1    
33.7    
34.3    
34.8    
35.4    
36.0    
36.5    
37.1    
37.6    
38.2    
38.8    
39.3    
39.9    
40.4    
41.0    
41.6    
42.1    
42.7    
43.3    
43.8    
44.4    
44.9    
45.5    
46.1    
46.6    
47.2    
47.8    
48.3    
48.9    
49.4    
50.0    
50.6    
51.1    
51.7    
52.2    
52.8    
53.4    
53.9    
54.5    
55.1    
55.6    
56.2    
56.7    
57.3    
57.9    
58.4    
59.0    
59.6    
60.1    
60.7    
61.2    
61.8    
62.4    
62.9    
63.5    
64.0    
64.6    
65.2    
65.7    
66.3    
66.9    
67.4    
68.0    
68.5    
69.1    
69.7    
70.2    
70.8    
71.3    
71.9    
72.5    
73.0    
73.6    
74.2    
74.7    
75.3    
75.8    
76.4    
77.0    
77.5    
78.1    
78.7    
79.2    
79.8    
80.3    
80.9    
81.5    
82.0    
82.6    
83.1    
83.7    
84.3    
84.8    
85.4    
86.0    
86.5    
87.1    
87.6    
88.2    
88.8    
89.3    
89.9    
90.4    
91.0    
91.6    
92.1    
92.7    
93.3    
93.8    
94.4    
94.9    
95.5    
96.1    
96.6    
97.2    
97.8    
98.3    
98.9    
99.4    
-found 22 predictions from path traversal
Error with prediction: snap lend_intergenic: 5930, rend_intergenic: 2598  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 30902, rend_intergenic: 30649  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 35258, rend_intergenic: 31092  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 72980, rend_intergenic: 70732  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 92086, rend_intergenic: 85704  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 16 predictions persist after filtering for low support