-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_26/scaffold_26_6765673-6863180

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_26-snap.1576-T1
Valid prediction for snap_scaffold_26-snap.1570-T1
Valid prediction for snap_scaffold_26-snap.1569-T1
Valid prediction for Augustus_model.g37092.t1
Valid prediction for GlimmerHMM_glimmerT_55943-T1
Valid prediction for snap_scaffold_26-snap.1558-T1
Valid prediction for GlimmerHMM_glimmerT_55951-T1
Valid prediction for Augustus_model.g37089.t1
Valid prediction for GlimmerHMM_glimmerT_55957-T1
Valid prediction for Augustus_model.g37088.t1
Valid prediction for snap_scaffold_26-snap.1552-T1
Valid prediction for GlimmerHMM_glimmerT_55954-T1
Valid prediction for snap_scaffold_26-snap.1572-T1
Valid prediction for snap_scaffold_26-snap.1561-T1
Valid prediction for GlimmerHMM_glimmerT_55953-T1
Valid prediction for Augustus_model.g37091.t1
Valid prediction for snap_scaffold_26-snap.1568-T1
Valid prediction for snap_scaffold_26-snap.1571-T1
Valid prediction for GlimmerHMM_glimmerT_55950-T1
Valid prediction for Augustus_model.g37095.t1
Valid prediction for Augustus_model.g37093.t1
Valid prediction for snap_scaffold_26-snap.1575-T1
Valid prediction for GlimmerHMM_glimmerT_55947-T1
Valid prediction for Augustus_model.g37087.t1
Valid prediction for GlimmerHMM_glimmerT_55942-T1
Valid prediction for snap_scaffold_26-snap.1563-T1
Valid prediction for GlimmerHMM_glimmerT_55962-T1
Valid prediction for snap_scaffold_26-snap.1554-T1
Valid prediction for snap_scaffold_26-snap.1566-T1
Valid prediction for snap_scaffold_26-snap.1560-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_26-snap.1556-T1
Valid prediction for GlimmerHMM_glimmerT_55944-T1
Valid prediction for Augustus_model.g37094.t1
Valid prediction for snap_scaffold_26-snap.1559-T1
Valid prediction for snap_scaffold_26-snap.1557-T1
Valid prediction for snap_scaffold_26-snap.1562-T1
Valid prediction for GlimmerHMM_glimmerT_55948-T1
Valid prediction for Augustus_model.g37096.t1
Valid prediction for GlimmerHMM_glimmerT_55960-T1
Valid prediction for GlimmerHMM_glimmerT_55964-T1
Valid prediction for GlimmerHMM_glimmerT_55956-T1
Valid prediction for snap_scaffold_26-snap.1553-T1
Valid prediction for snap_scaffold_26-snap.1573-T1
Valid prediction for snap_scaffold_26-snap.1574-T1
Valid prediction for GlimmerHMM_glimmerT_55952-T1
Valid prediction for GlimmerHMM_glimmerT_55958-T1
Valid prediction for snap_scaffold_26-snap.1565-T1
Valid prediction for GlimmerHMM_glimmerT_55955-T1
Valid prediction for Augustus_model.g37090.t1
Valid prediction for GlimmerHMM_glimmerT_55946-T1
Valid prediction for snap_scaffold_26-snap.1564-T1
Valid prediction for GlimmerHMM_glimmerT_55961-T1
Valid prediction for snap_scaffold_26-snap.1551-T1
Valid prediction for GlimmerHMM_glimmerT_55959-T1
Valid prediction for GlimmerHMM_glimmerT_55963-T1
Valid prediction for GlimmerHMM_glimmerT_55949-T1
Valid prediction for snap_scaffold_26-snap.1555-T1
Valid prediction for GlimmerHMM_glimmerT_55945-T1
Valid prediction for snap_scaffold_26-snap.1567-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 16086, rend_intergenic: 9963  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 26687, rend_intergenic: 21982  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 39108, rend_intergenic: 37937  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 46500, rend_intergenic: 39446  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 57665, rend_intergenic: 56478  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 68300, rend_intergenic: 64162  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 97508
-exon list size: 185


building trellis

0.5    
1.1    
1.6    
2.1    
2.7    
3.2    
3.7    
4.3    
4.8    
5.3    
5.9    
6.4    
7.0    
7.5    
8.0    
8.6    
9.1    
9.6    
10.2    
10.7    
11.2    
11.8    
12.3    
12.8    
13.4    
13.9    
14.4    
15.0    
15.5    
16.0    
16.6    
17.1    
17.6    
18.2    
18.7    
19.3    
19.8    
20.3    
20.9    
21.4    
21.9    
22.5    
23.0    
23.5    
24.1    
24.6    
25.1    
25.7    
26.2    
26.7    
27.3    
27.8    
28.3    
28.9    
29.4    
29.9    
30.5    
31.0    
31.6    
32.1    
32.6    
33.2    
33.7    
34.2    
34.8    
35.3    
35.8    
36.4    
36.9    
37.4    
38.0    
38.5    
39.0    
39.6    
40.1    
40.6    
41.2    
41.7    
42.2    
42.8    
43.3    
43.9    
44.4    
44.9    
45.5    
46.0    
46.5    
47.1    
47.6    
48.1    
48.7    
49.2    
49.7    
50.3    
50.8    
51.3    
51.9    
52.4    
52.9    
53.5    
54.0    
54.5    
55.1    
55.6    
56.1    
56.7    
57.2    
57.8    
58.3    
58.8    
59.4    
59.9    
60.4    
61.0    
61.5    
62.0    
62.6    
63.1    
63.6    
64.2    
64.7    
65.2    
65.8    
66.3    
66.8    
67.4    
67.9    
68.4    
69.0    
69.5    
70.1    
70.6    
71.1    
71.7    
72.2    
72.7    
73.3    
73.8    
74.3    
74.9    
75.4    
75.9    
76.5    
77.0    
77.5    
78.1    
78.6    
79.1    
79.7    
80.2    
80.7    
81.3    
81.8    
82.4    
82.9    
83.4    
84.0    
84.5    
85.0    
85.6    
86.1    
86.6    
87.2    
87.7    
88.2    
88.8    
89.3    
89.8    
90.4    
90.9    
91.4    
92.0    
92.5    
93.0    
93.6    
94.1    
94.7    
95.2    
95.7    
96.3    
96.8    
97.3    
97.9    
98.4    
98.9    
99.5    
-found 19 predictions from path traversal
Error with prediction: snap lend_intergenic: 16086, rend_intergenic: 9963  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 26687, rend_intergenic: 21982  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 39108, rend_intergenic: 37937  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 46500, rend_intergenic: 39446  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 57665, rend_intergenic: 56478  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 68300, rend_intergenic: 64162  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 12 predictions persist after filtering for low support