-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_26/scaffold_26_6261775-6408743

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_26-snap.1454-T1
Sorry, intron length (4) is less than minimum required (10)
Couldn't classify 126498, 126709
Sorry, prediction pasa_asmbl_35082.p1 fails validation.
(GGC)	 GT	126498-126709	GT	AAG
(GTT)	 AG	126859-126942	GT	AAG
(TTT)	 AG	127030-127118	GT	GGG
(TGG)	 AG	127218-127324	GT	AGG
(GCC)	 AG	127500-127622	GT	AGG
(GAC)	 AG	127759-127860	GT	AGG
(GAC)	 AG	128014-128118	GT	AGG
(GAA)	 AG	128638-128792	GT	ACG
(GCT)	 AG	129015-129182	GT	AGG
(GGA)	 AG	129288-129432	GT	AGG
(CAT)	 AG	129544-129621	GT	AAG
(GAG)	 AG	129755-129870	GT	AGG
(AGT)	 AG	130006-130092	GT	GAG
(GTA)	 AG	130320-130398	GT	AGG
(GTG)	 AG	130530-130705	GT	GGG
(GTT)	 AG	130818-130983	CA	AAC
-recovered pasa_asmbl_35082.p1, terminal, 130818, 130983
-recovered pasa_asmbl_35082.p1, internal, 126859, 126942
-recovered pasa_asmbl_35082.p1, internal, 127030, 127118
-recovered pasa_asmbl_35082.p1, internal, 127218, 127324
-recovered pasa_asmbl_35082.p1, internal, 127500, 127622
-recovered pasa_asmbl_35082.p1, internal, 127759, 127860
-recovered pasa_asmbl_35082.p1, internal, 128014, 128118
-recovered pasa_asmbl_35082.p1, internal, 128638, 128792
-recovered pasa_asmbl_35082.p1, internal, 129015, 129182
-recovered pasa_asmbl_35082.p1, internal, 129288, 129432
-recovered pasa_asmbl_35082.p1, internal, 129544, 129621
-recovered pasa_asmbl_35082.p1, internal, 129755, 129870
-recovered pasa_asmbl_35082.p1, internal, 130006, 130092
-recovered pasa_asmbl_35082.p1, internal, 130320, 130398
-recovered pasa_asmbl_35082.p1, internal, 130530, 130705
Valid prediction for Augustus_model.g37036.t1
Valid prediction for GlimmerHMM_glimmerT_55884-T1
Valid prediction for GlimmerHMM_glimmerT_55872-T1
Valid prediction for Augustus_model.g37041.t1
Valid prediction for snap_scaffold_26-snap.1457-T1
Valid prediction for snap_scaffold_26-snap.1445-T1
Valid prediction for snap_scaffold_26-snap.1447-T1
Valid prediction for HiQ_model.g37026.t1
Couldn't classify 125885, 125994
Sorry, prediction pasa_asmbl_35080.p1 fails validation.
(ATG)	 AA	124129-124159	GT	AGG
(GTG)	 AG	124269-124609	GT	AGG
(CCT)	 AG	124701-124812	GT	AGG
(CAA)	 AG	124929-125267	GT	AGG
(GCT)	 AG	125885-125994	CA	AGC
-recovered pasa_asmbl_35080.p1, initial, 124129, 124159
-recovered pasa_asmbl_35080.p1, internal, 124269, 124609
-recovered pasa_asmbl_35080.p1, internal, 124701, 124812
-recovered pasa_asmbl_35080.p1, internal, 124929, 125267
Valid prediction for snap_scaffold_26-snap.1456-T1
Valid prediction for GlimmerHMM_glimmerT_55861-T1
Valid prediction for snap_scaffold_26-snap.1462-T1
Valid prediction for snap_scaffold_26-snap.1438-T1
Valid prediction for snap_scaffold_26-snap.1451-T1
Valid prediction for Augustus_model.g37030.t1
Valid prediction for CodingQuarry_transcript_40392-T1
Valid prediction for snap_scaffold_26-snap.1431-T1
Valid prediction for Augustus_model.g37044.t1
Valid prediction for HiQ_model.g37042.t1
Valid prediction for pasa_asmbl_35073.p1
Valid prediction for GlimmerHMM_glimmerT_55874-T1
Valid prediction for GlimmerHMM_glimmerT_55880-T1
Valid prediction for pasa_asmbl_35077.p1
Valid prediction for snap_scaffold_26-snap.1435-T1
Valid prediction for snap_scaffold_26-snap.1436-T1
Valid prediction for GlimmerHMM_glimmerT_55864-T1
Valid prediction for CodingQuarry_transcript_40385-T1
Valid prediction for CodingQuarry_transcript_40384-T1
Valid prediction for snap_scaffold_26-snap.1453-T1
Valid prediction for GlimmerHMM_glimmerT_55865-T1
Valid prediction for Augustus_model.g37023.t1
Valid prediction for pasa_asmbl_35074.p1
Valid prediction for Augustus_model.g37046.t1
Valid prediction for GlimmerHMM_glimmerT_55881-T1
Valid prediction for snap_scaffold_26-snap.1463-T1
Valid prediction for snap_scaffold_26-snap.1460-T1
Valid prediction for GlimmerHMM_glimmerT_55886-T1
Valid prediction for HiQ_model.g37027.t1
Valid prediction for snap_scaffold_26-snap.1434-T1
Valid prediction for GlimmerHMM_glimmerT_55885-T1
Valid prediction for pasa_asmbl_35076.p1
Valid prediction for snap_scaffold_26-snap.1428-T1
Sorry, intron length (7) is less than minimum required (10)
Valid prediction for Augustus_model.g37031.t1
Valid prediction for GlimmerHMM_glimmerT_55870-T1
Valid prediction for snap_scaffold_26-snap.1459-T1
Valid prediction for Augustus_model.g37045.t1
Valid prediction for Augustus_model.g37035.t1
Valid prediction for snap_scaffold_26-snap.1458-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_26-snap.1427-T1
Valid prediction for GlimmerHMM_glimmerT_55875-T1
Valid prediction for Augustus_model.g37037.t1
Valid prediction for snap_scaffold_26-snap.1452-T1
Valid prediction for GlimmerHMM_glimmerT_55866-T1
Valid prediction for GlimmerHMM_glimmerT_55873-T1
Valid prediction for snap_scaffold_26-snap.1426-T1
Couldn't classify 84967, 85167
Sorry, prediction pasa_asmbl_35675.p1 fails validation.
(ATG)	 GG	83384-83455	GT	TGG
(GTG)	 AG	83710-83923	GT	AGG
(CGG)	 AG	84159-84518	GT	GGG
(AGG)	 AG	84654-84862	GT	AGG
(AGA)	 AG	84967-85167	TG	TGT
-recovered pasa_asmbl_35675.p1, initial, 83384, 83455
-recovered pasa_asmbl_35675.p1, internal, 83710, 83923
-recovered pasa_asmbl_35675.p1, internal, 84159, 84518
-recovered pasa_asmbl_35675.p1, internal, 84654, 84862
Valid prediction for CodingQuarry_transcript_40390-T1
Valid prediction for CodingQuarry_transcript_40391-T1
Valid prediction for snap_scaffold_26-snap.1441-T1
Couldn't classify 65302, 65350
Sorry, prediction pasa_asmbl_35677.p1 fails validation.
(ATG)	 AC	61394-61443	GT	GGG
(GGC)	 AG	62998-63101	GT	AGG
(GTC)	 AG	63182-63260	GT	TAG
(TAT)	 AG	63583-63652	GT	AGG
(TAC)	 AG	63754-63828	GT	CGG
(GTG)	 AG	63937-64035	GT	AGG
(GTG)	 AG	64226-64375	GT	AGG
(GTG)	 AG	64479-64547	GT	AGG
(GGT)	 AG	64683-64826	GT	GGG
(GTG)	 AG	64926-65068	GT	GGG
(GGA)	 AG	65302-65350	GT	CAG
-recovered pasa_asmbl_35677.p1, initial, 61394, 61443
-recovered pasa_asmbl_35677.p1, internal, 62998, 63101
-recovered pasa_asmbl_35677.p1, internal, 63182, 63260
-recovered pasa_asmbl_35677.p1, internal, 63583, 63652
-recovered pasa_asmbl_35677.p1, internal, 63754, 63828
-recovered pasa_asmbl_35677.p1, internal, 63937, 64035
-recovered pasa_asmbl_35677.p1, internal, 64226, 64375
-recovered pasa_asmbl_35677.p1, internal, 64479, 64547
-recovered pasa_asmbl_35677.p1, internal, 64683, 64826
-recovered pasa_asmbl_35677.p1, internal, 64926, 65068
-recovered pasa_asmbl_35677.p1, internal, 65302, 65350
Valid prediction for Augustus_model.g37038.t1
Valid prediction for pasa_asmbl_35668.p1
Valid prediction for snap_scaffold_26-snap.1430-T1
Valid prediction for snap_scaffold_26-snap.1439-T1
Valid prediction for snap_scaffold_26-snap.1450-T1
Valid prediction for HiQ_model.g37028.t1
Valid prediction for snap_scaffold_26-snap.1442-T1
Valid prediction for snap_scaffold_26-snap.1443-T1
Valid prediction for GlimmerHMM_glimmerT_55878-T1
Valid prediction for CodingQuarry_transcript_40386-T1
Valid prediction for Augustus_model.g37029.t1
Valid prediction for GlimmerHMM_glimmerT_55882-T1
Valid prediction for snap_scaffold_26-snap.1429-T1
Valid prediction for GlimmerHMM_glimmerT_55859-T1
Valid prediction for Augustus_model.g37022.t1
Valid prediction for Augustus_model.g37025.t1
Valid prediction for pasa_asmbl_35672.p1
Valid prediction for snap_scaffold_26-snap.1433-T1
Valid prediction for snap_scaffold_26-snap.1461-T1
Valid prediction for snap_scaffold_26-snap.1444-T1
Valid prediction for GlimmerHMM_glimmerT_55876-T1
Valid prediction for snap_scaffold_26-snap.1448-T1
Valid prediction for HiQ_model.g37032.t1
Valid prediction for GlimmerHMM_glimmerT_55883-T1
Valid prediction for CodingQuarry_transcript_40389-T1
Valid prediction for CodingQuarry_transcript_40388-T1
Valid prediction for GlimmerHMM_glimmerT_55862-T1
Valid prediction for Augustus_model.g37043.t1
Couldn't classify 77700, 77727
Couldn't classify 78267, 78313
Sorry, prediction pasa_asmbl_35676.p1 fails validation.
(AAC)	 AC	77700-77727	GT	AGG
(GTC)	 AG	77842-77993	GT	AAG
(GCC)	 AG	78081-78177	GT	ATG
(ATT)	 AG	78267-78313	GC	CAG
-recovered pasa_asmbl_35676.p1, internal, 77842, 77993
-recovered pasa_asmbl_35676.p1, internal, 78081, 78177
-recovered pasa_asmbl_35676.p1, internal, 78267, 78313
Valid prediction for GlimmerHMM_glimmerT_55871-T1
Valid prediction for snap_scaffold_26-snap.1455-T1
Valid prediction for GlimmerHMM_glimmerT_55867-T1
Valid prediction for Augustus_model.g37040.t1
Valid prediction for GlimmerHMM_glimmerT_55863-T1
Valid prediction for HiQ_model.g37033.t1
Valid prediction for Augustus_model.g37034.t1
Valid prediction for GlimmerHMM_glimmerT_55868-T1
Valid prediction for snap_scaffold_26-snap.1449-T1
Valid prediction for HiQ_model.g37039.t1
Valid prediction for pasa_asmbl_35683.p1
Valid prediction for pasa_asmbl_35887.p1
Valid prediction for snap_scaffold_26-snap.1437-T1
Valid prediction for GlimmerHMM_glimmerT_55860-T1
Valid prediction for GlimmerHMM_glimmerT_55858-T1
Valid prediction for GlimmerHMM_glimmerT_55879-T1
Valid prediction for CodingQuarry_transcript_40387-T1
Valid prediction for snap_scaffold_26-snap.1440-T1
Valid prediction for GlimmerHMM_glimmerT_55869-T1
Valid prediction for snap_scaffold_26-snap.1446-T1
Valid prediction for snap_scaffold_26-snap.1432-T1
Valid prediction for Augustus_model.g37024.t1
Valid prediction for GlimmerHMM_glimmerT_55877-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 9432, rend_intergenic: 6624  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 16572, rend_intergenic: 11427  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 20490, rend_intergenic: 16575  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 44395, rend_intergenic: 43160  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 79794, rend_intergenic: 75133  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 146969
-exon list size: 402


building trellis

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17.8    
18.1    
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18.6    
18.8    
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20.0    
20.3    
20.5    
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22.5    
22.8    
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23.3    
23.5    
23.8    
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25.7    
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26.2    
26.5    
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27.0    
27.2    
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28.0    
28.2    
28.5    
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29.2    
29.5    
29.7    
30.0    
30.2    
30.4    
30.7    
30.9    
31.2    
31.4    
31.7    
31.9    
32.2    
32.4    
32.7    
32.9    
33.2    
33.4    
33.7    
33.9    
34.2    
34.4    
34.7    
34.9    
35.1    
35.4    
35.6    
35.9    
36.1    
36.4    
36.6    
36.9    
37.1    
37.4    
37.6    
37.9    
38.1    
38.4    
38.6    
38.9    
39.1    
39.4    
39.6    
39.9    
40.1    
40.3    
40.6    
40.8    
41.1    
41.3    
41.6    
41.8    
42.1    
42.3    
42.6    
42.8    
43.1    
43.3    
43.6    
43.8    
44.1    
44.3    
44.6    
44.8    
45.0    
45.3    
45.5    
45.8    
46.0    
46.3    
46.5    
46.8    
47.0    
47.3    
47.5    
47.8    
48.0    
48.3    
48.5    
48.8    
49.0    
49.3    
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50.0    
50.2    
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51.2    
51.5    
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52.0    
52.2    
52.5    
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53.2    
53.5    
53.7    
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54.2    
54.5    
54.7    
55.0    
55.2    
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57.2    
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58.7    
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59.2    
59.4    
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60.1    
60.4    
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68.6    
68.8    
69.1    
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69.6    
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70.0    
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70.5    
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71.0    
71.3    
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72.0    
72.3    
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73.0    
73.3    
73.5    
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74.0    
74.3    
74.5    
74.8    
75.0    
75.2    
75.5    
75.7    
76.0    
76.2    
76.5    
76.7    
77.0    
77.2    
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78.0    
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78.5    
78.7    
79.0    
79.2    
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80.0    
80.2    
80.4    
80.7    
80.9    
81.2    
81.4    
81.7    
81.9    
82.2    
82.4    
82.7    
82.9    
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83.4    
83.7    
83.9    
84.2    
84.4    
84.7    
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86.4    
86.6    
86.9    
87.1    
87.4    
87.6    
87.9    
88.1    
88.4    
88.6    
88.9    
89.1    
89.4    
89.6    
89.9    
90.1    
90.3    
90.6    
90.8    
91.1    
91.3    
91.6    
91.8    
92.1    
92.3    
92.6    
92.8    
93.1    
93.3    
93.6    
93.8    
94.1    
94.3    
94.6    
94.8    
95.0    
95.3    
95.5    
95.8    
96.0    
96.3    
96.5    
96.8    
97.0    
97.3    
97.5    
97.8    
98.0    
98.3    
98.5    
98.8    
99.0    
99.3    
99.5    
99.8    
-found 36 predictions from path traversal
Error with prediction: snap lend_intergenic: 9432, rend_intergenic: 6624  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 16572, rend_intergenic: 11427  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 20490, rend_intergenic: 16575  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 44395, rend_intergenic: 43160  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 79794, rend_intergenic: 75133  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 28 predictions persist after filtering for low support