-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_26/scaffold_26_6143291-6263555

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_26-snap.1400-T1
Valid prediction for snap_scaffold_26-snap.1398-T1
Valid prediction for GlimmerHMM_glimmerT_55857-T1
Valid prediction for snap_scaffold_26-snap.1413-T1
Valid prediction for snap_scaffold_26-snap.1423-T1
Valid prediction for snap_scaffold_26-snap.1419-T1
Valid prediction for GlimmerHMM_glimmerT_55838-T1
Valid prediction for snap_scaffold_26-snap.1399-T1
Valid prediction for GlimmerHMM_glimmerT_55831-T1
Valid prediction for Augustus_model.g37007.t1
Valid prediction for snap_scaffold_26-snap.1415-T1
Valid prediction for GlimmerHMM_glimmerT_55832-T1
Valid prediction for GlimmerHMM_glimmerT_55837-T1
Valid prediction for GlimmerHMM_glimmerT_55853-T1
Valid prediction for GlimmerHMM_glimmerT_55849-T1
Valid prediction for GlimmerHMM_glimmerT_55846-T1
Valid prediction for snap_scaffold_26-snap.1412-T1
Valid prediction for Augustus_model.g37010.t1
Valid prediction for snap_scaffold_26-snap.1408-T1
Valid prediction for Augustus_model.g37017.t1
Valid prediction for GlimmerHMM_glimmerT_55841-T1
Valid prediction for snap_scaffold_26-snap.1405-T1
Valid prediction for GlimmerHMM_glimmerT_55840-T1
Valid prediction for GlimmerHMM_glimmerT_55830-T1
Valid prediction for GlimmerHMM_glimmerT_55839-T1
Valid prediction for snap_scaffold_26-snap.1391-T1
Valid prediction for snap_scaffold_26-snap.1417-T1
Valid prediction for snap_scaffold_26-snap.1393-T1
Valid prediction for snap_scaffold_26-snap.1394-T1
Valid prediction for snap_scaffold_26-snap.1404-T1
Valid prediction for snap_scaffold_26-snap.1409-T1
Valid prediction for GlimmerHMM_glimmerT_55834-T1
Valid prediction for Augustus_model.g37016.t1
Valid prediction for GlimmerHMM_glimmerT_55836-T1
Valid prediction for Augustus_model.g37021.t1
Valid prediction for Augustus_model.g37014.t1
Valid prediction for GlimmerHMM_glimmerT_55845-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for Augustus_model.g37015.t1
Valid prediction for GlimmerHMM_glimmerT_55855-T1
Valid prediction for Augustus_model.g37011.t1
Valid prediction for snap_scaffold_26-snap.1402-T1
Valid prediction for Augustus_model.g37009.t1
Valid prediction for GlimmerHMM_glimmerT_55842-T1
Valid prediction for GlimmerHMM_glimmerT_55844-T1
Valid prediction for GlimmerHMM_glimmerT_55850-T1
Valid prediction for snap_scaffold_26-snap.1392-T1
Valid prediction for Augustus_model.g37012.t1
Valid prediction for snap_scaffold_26-snap.1418-T1
Valid prediction for GlimmerHMM_glimmerT_55851-T1
Valid prediction for snap_scaffold_26-snap.1411-T1
Valid prediction for GlimmerHMM_glimmerT_55848-T1
Valid prediction for snap_scaffold_26-snap.1395-T1
Valid prediction for snap_scaffold_26-snap.1390-T1
Valid prediction for snap_scaffold_26-snap.1416-T1
Valid prediction for snap_scaffold_26-snap.1397-T1
Valid prediction for snap_scaffold_26-snap.1406-T1
Valid prediction for snap_scaffold_26-snap.1422-T1
Sorry, intron length (6) is less than minimum required (10)
Valid prediction for snap_scaffold_26-snap.1403-T1
Valid prediction for Augustus_model.g37018.t1
Valid prediction for GlimmerHMM_glimmerT_55852-T1
Valid prediction for Augustus_model.g37013.t1
Valid prediction for snap_scaffold_26-snap.1407-T1
Valid prediction for GlimmerHMM_glimmerT_55854-T1
Valid prediction for Augustus_model.g37020.t1
Valid prediction for snap_scaffold_26-snap.1420-T1
Valid prediction for snap_scaffold_26-snap.1396-T1
Valid prediction for Augustus_model.g37008.t1
Valid prediction for snap_scaffold_26-snap.1414-T1
Valid prediction for snap_scaffold_26-snap.1401-T1
Valid prediction for GlimmerHMM_glimmerT_55847-T1
Valid prediction for snap_scaffold_26-snap.1410-T1
Valid prediction for snap_scaffold_26-snap.1421-T1
Valid prediction for GlimmerHMM_glimmerT_55843-T1
Valid prediction for GlimmerHMM_glimmerT_55856-T1
Valid prediction for GlimmerHMM_glimmerT_55833-T1
Valid prediction for Augustus_model.g37019.t1
Valid prediction for GlimmerHMM_glimmerT_55835-T1
Valid prediction for snap_scaffold_26-snap.1424-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 6120, rend_intergenic: 3860  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 29412, rend_intergenic: 21186  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 77595, rend_intergenic: 75280  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 83022, rend_intergenic: 78368  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 87006, rend_intergenic: 83810  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 91941, rend_intergenic: 87995  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 115865, rend_intergenic: 113245  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 120265
-exon list size: 271


building trellis

0.4    
0.7    
1.1    
1.5    
1.8    
2.2    
2.6    
2.9    
3.3    
3.7    
4.0    
4.4    
4.8    
5.1    
5.5    
5.9    
6.2    
6.6    
7.0    
7.3    
7.7    
8.1    
8.4    
8.8    
9.2    
9.5    
9.9    
10.3    
10.6    
11.0    
11.4    
11.7    
12.1    
12.5    
12.8    
13.2    
13.6    
13.9    
14.3    
14.7    
15.0    
15.4    
15.8    
16.1    
16.5    
16.8    
17.2    
17.6    
17.9    
18.3    
18.7    
19.0    
19.4    
19.8    
20.1    
20.5    
20.9    
21.2    
21.6    
22.0    
22.3    
22.7    
23.1    
23.4    
23.8    
24.2    
24.5    
24.9    
25.3    
25.6    
26.0    
26.4    
26.7    
27.1    
27.5    
27.8    
28.2    
28.6    
28.9    
29.3    
29.7    
30.0    
30.4    
30.8    
31.1    
31.5    
31.9    
32.2    
32.6    
33.0    
33.3    
33.7    
34.1    
34.4    
34.8    
35.2    
35.5    
35.9    
36.3    
36.6    
37.0    
37.4    
37.7    
38.1    
38.5    
38.8    
39.2    
39.6    
39.9    
40.3    
40.7    
41.0    
41.4    
41.8    
42.1    
42.5    
42.9    
43.2    
43.6    
44.0    
44.3    
44.7    
45.1    
45.4    
45.8    
46.2    
46.5    
46.9    
47.3    
47.6    
48.0    
48.4    
48.7    
49.1    
49.5    
49.8    
50.2    
50.5    
50.9    
51.3    
51.6    
52.0    
52.4    
52.7    
53.1    
53.5    
53.8    
54.2    
54.6    
54.9    
55.3    
55.7    
56.0    
56.4    
56.8    
57.1    
57.5    
57.9    
58.2    
58.6    
59.0    
59.3    
59.7    
60.1    
60.4    
60.8    
61.2    
61.5    
61.9    
62.3    
62.6    
63.0    
63.4    
63.7    
64.1    
64.5    
64.8    
65.2    
65.6    
65.9    
66.3    
66.7    
67.0    
67.4    
67.8    
68.1    
68.5    
68.9    
69.2    
69.6    
70.0    
70.3    
70.7    
71.1    
71.4    
71.8    
72.2    
72.5    
72.9    
73.3    
73.6    
74.0    
74.4    
74.7    
75.1    
75.5    
75.8    
76.2    
76.6    
76.9    
77.3    
77.7    
78.0    
78.4    
78.8    
79.1    
79.5    
79.9    
80.2    
80.6    
81.0    
81.3    
81.7    
82.1    
82.4    
82.8    
83.2    
83.5    
83.9    
84.2    
84.6    
85.0    
85.3    
85.7    
86.1    
86.4    
86.8    
87.2    
87.5    
87.9    
88.3    
88.6    
89.0    
89.4    
89.7    
90.1    
90.5    
90.8    
91.2    
91.6    
91.9    
92.3    
92.7    
93.0    
93.4    
93.8    
94.1    
94.5    
94.9    
95.2    
95.6    
96.0    
96.3    
96.7    
97.1    
97.4    
97.8    
98.2    
98.5    
98.9    
99.3    
99.6    
-found 30 predictions from path traversal
Error with prediction: snap lend_intergenic: 6120, rend_intergenic: 3860  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 29412, rend_intergenic: 21186  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 77595, rend_intergenic: 75280  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 83022, rend_intergenic: 78368  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 87006, rend_intergenic: 83810  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 91941, rend_intergenic: 87995  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 115865, rend_intergenic: 113245  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 17 predictions persist after filtering for low support