-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_26/scaffold_26_563220-746172

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_26-snap.137-T1
Valid prediction for snap_scaffold_26-snap.138-T1
Valid prediction for GlimmerHMM_glimmerT_54993-T1
Valid prediction for snap_scaffold_26-snap.113-T1
Valid prediction for snap_scaffold_26-snap.156-T1
Valid prediction for snap_scaffold_26-snap.121-T1
Valid prediction for snap_scaffold_26-snap.119-T1
Valid prediction for snap_scaffold_26-snap.125-T1
Valid prediction for snap_scaffold_26-snap.146-T1
Valid prediction for snap_scaffold_26-snap.127-T1
Valid prediction for snap_scaffold_26-snap.124-T1
Couldn't classify 168465, 168749
Sorry, prediction pasa_asmbl_34691.p1 fails validation.
(ATG)	 CC	166939-166992	GT	AGG
(CTG)	 AG	168091-168192	GT	AGG
(GTC)	 AG	168465-168749	CG	GTC
-recovered pasa_asmbl_34691.p1, initial, 166939, 166992
-recovered pasa_asmbl_34691.p1, internal, 168091, 168192
Valid prediction for snap_scaffold_26-snap.141-T1
Valid prediction for GlimmerHMM_glimmerT_54995-T1
Valid prediction for snap_scaffold_26-snap.118-T1
Valid prediction for Augustus_model.g36478.t1
Valid prediction for snap_scaffold_26-snap.153-T1
Valid prediction for Augustus_model.g36477.t1
Couldn't classify 137288, 137438
Couldn't classify 137643, 137836
Sorry, prediction pasa_asmbl_34690.p1 fails validation.
(GAG)	 AG	137288-137438	GT	AGG
(GTA)	 AG	137643-137836	CC	GCC
-recovered pasa_asmbl_34690.p1, internal, 137288, 137438
Valid prediction for snap_scaffold_26-snap.152-T1
Valid prediction for GlimmerHMM_glimmerT_55005-T1
Valid prediction for snap_scaffold_26-snap.114-T1
Valid prediction for Augustus_model.g36471.t1
Valid prediction for snap_scaffold_26-snap.133-T1
Couldn't classify 145304, 145369
Sorry, prediction pasa_asmbl_35339.p1 fails validation.
(GTG)	 GG	145304-145369	GT	AGG
(GGG)	 AG	145705-146301	TG	GAT
-recovered pasa_asmbl_35339.p1, terminal, 145705, 146301
Valid prediction for Augustus_model.g36480.t1
Valid prediction for Augustus_model.g36481.t1
Valid prediction for snap_scaffold_26-snap.149-T1
Valid prediction for snap_scaffold_26-snap.115-T1
Valid prediction for GlimmerHMM_glimmerT_54990-T1
Valid prediction for GlimmerHMM_glimmerT_55006-T1
Valid prediction for snap_scaffold_26-snap.150-T1
Valid prediction for GlimmerHMM_glimmerT_55003-T1
Valid prediction for GlimmerHMM_glimmerT_55004-T1
Valid prediction for GlimmerHMM_glimmerT_54988-T1
Valid prediction for GlimmerHMM_glimmerT_55000-T1
Valid prediction for GlimmerHMM_glimmerT_55001-T1
Valid prediction for GlimmerHMM_glimmerT_54994-T1
Valid prediction for Augustus_model.g36476.t1
Valid prediction for snap_scaffold_26-snap.129-T1
Couldn't classify 170196, 170277
Sorry, prediction pasa_asmbl_35314.p2 fails validation.
(AGT)	 CC	170196-170277	GT	AGG
(GTG)	 AG	170496-170713	TG	GAT
-recovered pasa_asmbl_35314.p2, terminal, 170496, 170713
Couldn't classify 169308, 169850
Sorry, prediction pasa_asmbl_34692.p1 fails validation.
(GAG)	 TG	169308-169850	AC	GAA
Valid prediction for snap_scaffold_26-snap.142-T1
Valid prediction for snap_scaffold_26-snap.139-T1
Valid prediction for snap_scaffold_26-snap.136-T1
Valid prediction for snap_scaffold_26-snap.131-T1
Valid prediction for Augustus_model.g36472.t1
Valid prediction for CodingQuarry_transcript_40242-T1
Valid prediction for pasa_asmbl_35350.p1
Valid prediction for GlimmerHMM_glimmerT_55002-T1
Valid prediction for snap_scaffold_26-snap.126-T1
Valid prediction for snap_scaffold_26-snap.148-T1
Valid prediction for GlimmerHMM_glimmerT_54987-T1
Valid prediction for GlimmerHMM_glimmerT_54992-T1
Couldn't classify 140454, 140582
Couldn't classify 141717, 141797
Sorry, prediction CodingQuarry_transcript_40241-T1 fails validation.
(ATG)	 GA	138101-138172	GT	AGG
(GAA)	 AG	140454-140582	AG	AGA
(AGT)	 CT	141717-141797	CC	AAC
-recovered CodingQuarry_transcript_40241-T1, initial, 138101, 138172
Valid prediction for Augustus_model.g36479.t1
Valid prediction for snap_scaffold_26-snap.122-T1
Valid prediction for snap_scaffold_26-snap.145-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_54998-T1
Valid prediction for snap_scaffold_26-snap.151-T1
Valid prediction for GlimmerHMM_glimmerT_54996-T1
Valid prediction for CodingQuarry_transcript_40240-T1
Valid prediction for snap_scaffold_26-snap.116-T1
Valid prediction for GlimmerHMM_glimmerT_54991-T1
Valid prediction for GlimmerHMM_glimmerT_54997-T1
Valid prediction for snap_scaffold_26-snap.130-T1
Valid prediction for GlimmerHMM_glimmerT_54999-T1
Valid prediction for snap_scaffold_26-snap.154-T1
Valid prediction for snap_scaffold_26-snap.134-T1
Valid prediction for snap_scaffold_26-snap.140-T1
Valid prediction for snap_scaffold_26-snap.135-T1
Valid prediction for snap_scaffold_26-snap.144-T1
Sorry, intron length (3) is less than minimum required (10)
Valid prediction for snap_scaffold_26-snap.123-T1
Valid prediction for Augustus_model.g36475.t1
Valid prediction for GlimmerHMM_glimmerT_54989-T1
Valid prediction for snap_scaffold_26-snap.132-T1
Valid prediction for GlimmerHMM_glimmerT_54986-T1
Valid prediction for snap_scaffold_26-snap.128-T1
Valid prediction for Augustus_model.g36473.t1
Valid prediction for Augustus_model.g36474.t1
Valid prediction for snap_scaffold_26-snap.147-T1
Valid prediction for snap_scaffold_26-snap.117-T1
Valid prediction for snap_scaffold_26-snap.120-T1
Valid prediction for snap_scaffold_26-snap.157-T1
Valid prediction for Augustus_model.g36470.t1
Valid prediction for snap_scaffold_26-snap.155-T1
Valid prediction for Augustus_model.g36469.t1
Valid prediction for snap_scaffold_26-snap.143-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 32894, rend_intergenic: 20681  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 35067, rend_intergenic: 33422  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 43175, rend_intergenic: 40267  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 61664, rend_intergenic: 43304  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 62848, rend_intergenic: 62008  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 68629, rend_intergenic: 62850  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 69034, rend_intergenic: 68681  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 100397, rend_intergenic: 89382  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 104434, rend_intergenic: 101150  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 118767, rend_intergenic: 105177  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 122085, rend_intergenic: 119692  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 143541, rend_intergenic: 135224  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 147179, rend_intergenic: 143649  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 157087, rend_intergenic: 153433  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 160692, rend_intergenic: 158280  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 161292, rend_intergenic: 160713  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 174309, rend_intergenic: 168389  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 179368, rend_intergenic: 175404  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 182953
-exon list size: 314


building trellis

0.3    
0.6    
0.9    
1.3    
1.6    
1.9    
2.2    
2.5    
2.8    
3.2    
3.5    
3.8    
4.1    
4.4    
4.7    
5.1    
5.4    
5.7    
6.0    
6.3    
6.6    
7.0    
7.3    
7.6    
7.9    
8.2    
8.5    
8.9    
9.2    
9.5    
9.8    
10.1    
10.4    
10.8    
11.1    
11.4    
11.7    
12.0    
12.3    
12.7    
13.0    
13.3    
13.6    
13.9    
14.2    
14.6    
14.9    
15.2    
15.5    
15.8    
16.1    
16.5    
16.8    
17.1    
17.4    
17.7    
18.0    
18.4    
18.7    
19.0    
19.3    
19.6    
19.9    
20.3    
20.6    
20.9    
21.2    
21.5    
21.8    
22.2    
22.5    
22.8    
23.1    
23.4    
23.7    
24.1    
24.4    
24.7    
25.0    
25.3    
25.6    
25.9    
26.3    
26.6    
26.9    
27.2    
27.5    
27.8    
28.2    
28.5    
28.8    
29.1    
29.4    
29.7    
30.1    
30.4    
30.7    
31.0    
31.3    
31.6    
32.0    
32.3    
32.6    
32.9    
33.2    
33.5    
33.9    
34.2    
34.5    
34.8    
35.1    
35.4    
35.8    
36.1    
36.4    
36.7    
37.0    
37.3    
37.7    
38.0    
38.3    
38.6    
38.9    
39.2    
39.6    
39.9    
40.2    
40.5    
40.8    
41.1    
41.5    
41.8    
42.1    
42.4    
42.7    
43.0    
43.4    
43.7    
44.0    
44.3    
44.6    
44.9    
45.3    
45.6    
45.9    
46.2    
46.5    
46.8    
47.2    
47.5    
47.8    
48.1    
48.4    
48.7    
49.1    
49.4    
49.7    
50.0    
50.3    
50.6    
50.9    
51.3    
51.6    
51.9    
52.2    
52.5    
52.8    
53.2    
53.5    
53.8    
54.1    
54.4    
54.7    
55.1    
55.4    
55.7    
56.0    
56.3    
56.6    
57.0    
57.3    
57.6    
57.9    
58.2    
58.5    
58.9    
59.2    
59.5    
59.8    
60.1    
60.4    
60.8    
61.1    
61.4    
61.7    
62.0    
62.3    
62.7    
63.0    
63.3    
63.6    
63.9    
64.2    
64.6    
64.9    
65.2    
65.5    
65.8    
66.1    
66.5    
66.8    
67.1    
67.4    
67.7    
68.0    
68.4    
68.7    
69.0    
69.3    
69.6    
69.9    
70.3    
70.6    
70.9    
71.2    
71.5    
71.8    
72.2    
72.5    
72.8    
73.1    
73.4    
73.7    
74.1    
74.4    
74.7    
75.0    
75.3    
75.6    
75.9    
76.3    
76.6    
76.9    
77.2    
77.5    
77.8    
78.2    
78.5    
78.8    
79.1    
79.4    
79.7    
80.1    
80.4    
80.7    
81.0    
81.3    
81.6    
82.0    
82.3    
82.6    
82.9    
83.2    
83.5    
83.9    
84.2    
84.5    
84.8    
85.1    
85.4    
85.8    
86.1    
86.4    
86.7    
87.0    
87.3    
87.7    
88.0    
88.3    
88.6    
88.9    
89.2    
89.6    
89.9    
90.2    
90.5    
90.8    
91.1    
91.5    
91.8    
92.1    
92.4    
92.7    
93.0    
93.4    
93.7    
94.0    
94.3    
94.6    
94.9    
95.3    
95.6    
95.9    
96.2    
96.5    
96.8    
97.2    
97.5    
97.8    
98.1    
98.4    
98.7    
99.1    
99.4    
99.7    
-found 25 predictions from path traversal
Error with prediction: snap lend_intergenic: 32894, rend_intergenic: 20681  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 35067, rend_intergenic: 33422  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 43175, rend_intergenic: 40267  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 61664, rend_intergenic: 43304  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 62848, rend_intergenic: 62008  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 68629, rend_intergenic: 62850  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 69034, rend_intergenic: 68681  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 100397, rend_intergenic: 89382  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 104434, rend_intergenic: 101150  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 118767, rend_intergenic: 105177  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 122085, rend_intergenic: 119692  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 143541, rend_intergenic: 135224  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 147179, rend_intergenic: 143649  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 157087, rend_intergenic: 153433  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 160692, rend_intergenic: 158280  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 161292, rend_intergenic: 160713  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 174309, rend_intergenic: 168389  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 179368, rend_intergenic: 175404  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 16 predictions persist after filtering for low support