-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_26/scaffold_26_5498302-5685991

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_55725-T1
Valid prediction for snap_scaffold_26-snap.1244-T1
Valid prediction for Augustus_model.g36930.t1
Valid prediction for snap_scaffold_26-snap.1230-T1
Valid prediction for snap_scaffold_26-snap.1240-T1
Valid prediction for GlimmerHMM_glimmerT_55715-T1
Valid prediction for HiQ_model.g36909.t1
Valid prediction for pasa_asmbl_35029.p1
Valid prediction for CodingQuarry_transcript_40360-T1
Valid prediction for pasa_asmbl_35012.p1
Valid prediction for GlimmerHMM_glimmerT_55707-T1
Valid prediction for GlimmerHMM_glimmerT_55714-T1
Valid prediction for Augustus_model.g36915.t1
Valid prediction for CodingQuarry_transcript_40355-T1
Valid prediction for GlimmerHMM_glimmerT_55703-T1
Valid prediction for snap_scaffold_26-snap.1235-T1
Valid prediction for GlimmerHMM_glimmerT_55706-T1
Valid prediction for snap_scaffold_26-snap.1267-T1
Valid prediction for CodingQuarry_transcript_40357-T1
Couldn't classify 36340, 36455
Sorry, prediction pasa_asmbl_35017.p1 fails validation.
(GAG)	 AG	36340-36455	GT	AGG
(CCT)	 AG	38131-38287	GT	AGG
(ACG)	 AG	38401-38572	GT	AGG
(AGG)	 AG	38683-38813	GT	AGG
(GCC)	 AG	38913-39055	GT	GGG
(GGA)	 AG	39195-39270	GT	AAG
-recovered pasa_asmbl_35017.p1, terminal, 39195, 39270
-recovered pasa_asmbl_35017.p1, internal, 36340, 36455
-recovered pasa_asmbl_35017.p1, internal, 38131, 38287
-recovered pasa_asmbl_35017.p1, internal, 38401, 38572
-recovered pasa_asmbl_35017.p1, internal, 38683, 38813
-recovered pasa_asmbl_35017.p1, internal, 38913, 39055
-recovered pasa_asmbl_35017.p1, internal, 39195, 39270
Valid prediction for Augustus_model.g36922.t1
Valid prediction for GlimmerHMM_glimmerT_55718-T1
Valid prediction for snap_scaffold_26-snap.1242-T1
Valid prediction for GlimmerHMM_glimmerT_55722-T1
Valid prediction for CodingQuarry_transcript_40362-T1
Valid prediction for snap_scaffold_26-snap.1227-T1
Valid prediction for GlimmerHMM_glimmerT_55704-T1
Valid prediction for Augustus_model.g36931.t1
Valid prediction for CodingQuarry_transcript_40354-T1
Valid prediction for snap_scaffold_26-snap.1269-T1
Valid prediction for snap_scaffold_26-snap.1247-T1
Valid prediction for GlimmerHMM_glimmerT_55712-T1
Valid prediction for snap_scaffold_26-snap.1246-T1
Valid prediction for GlimmerHMM_glimmerT_55708-T1
Valid prediction for snap_scaffold_26-snap.1229-T1
Valid prediction for snap_scaffold_26-snap.1254-T1
Valid prediction for snap_scaffold_26-snap.1250-T1
Valid prediction for CodingQuarry_transcript_40356-T1
Valid prediction for CodingQuarry_transcript_40361-T1
Valid prediction for HiQ_model.g36924.t1
Valid prediction for GlimmerHMM_glimmerT_55705-T1
Valid prediction for snap_scaffold_26-snap.1255-T1
Valid prediction for snap_scaffold_26-snap.1243-T1
Valid prediction for snap_scaffold_26-snap.1261-T1
Valid prediction for HiQ_model.g36911.t1
Valid prediction for snap_scaffold_26-snap.1258-T1
Sorry, intron length (6) is less than minimum required (10)
Valid prediction for snap_scaffold_26-snap.1248-T1
Valid prediction for GlimmerHMM_glimmerT_55726-T1
Valid prediction for Augustus_model.g36913.t1
Valid prediction for Augustus_model.g36914.t1
Couldn't classify 63671, 63853
Sorry, prediction pasa_asmbl_35020.p1 fails validation.
(CCA)	 AG	63671-63853	GC	AGG
(ATC)	 AG	64024-64185	GT	AGG
(GTG)	 AG	64309-64482	GT	ACG
(AAA)	 AG	64594-64675	GT	GGG
(GCT)	 AG	64795-64943	GT	GGG
(GAG)	 AG	65056-65322	AG	AGA
-recovered pasa_asmbl_35020.p1, terminal, 65056, 65322
-recovered pasa_asmbl_35020.p1, internal, 63671, 63853
-recovered pasa_asmbl_35020.p1, internal, 64024, 64185
-recovered pasa_asmbl_35020.p1, internal, 64309, 64482
-recovered pasa_asmbl_35020.p1, internal, 64594, 64675
-recovered pasa_asmbl_35020.p1, internal, 64795, 64943
Valid prediction for GlimmerHMM_glimmerT_55710-T1
Valid prediction for CodingQuarry_transcript_40358-T1
Valid prediction for snap_scaffold_26-snap.1251-T1
Valid prediction for GlimmerHMM_glimmerT_55701-T1
Valid prediction for snap_scaffold_26-snap.1228-T1
Valid prediction for GlimmerHMM_glimmerT_55719-T1
Valid prediction for GlimmerHMM_glimmerT_55717-T1
Couldn't classify 1649, 1808
Sorry, prediction pasa_asmbl_35006.p1 fails validation.
(AAG)	 AG	1649-1808	GT	AGG
(CAA)	 AG	2550-2692	GT	AGG
(CGT)	 AG	2810-2899	TG	AAT
-recovered pasa_asmbl_35006.p1, terminal, 2810, 2899
-recovered pasa_asmbl_35006.p1, internal, 1649, 1808
-recovered pasa_asmbl_35006.p1, internal, 2550, 2692
Valid prediction for snap_scaffold_26-snap.1237-T1
Valid prediction for Augustus_model.g36908.t1
Valid prediction for GlimmerHMM_glimmerT_55733-T1
Valid prediction for snap_scaffold_26-snap.1232-T1
Valid prediction for pasa_asmbl_35008.p1
Valid prediction for GlimmerHMM_glimmerT_55713-T1
Couldn't classify 61424, 62500
Couldn't classify 63455, 63523
Sorry, prediction pasa_asmbl_35024.p1 fails validation.
(ACG)	 CC	61424-62500	GT	ATG
(CTC)	 AG	63021-63287	GT	AGG
(ATC)	 AG	63455-63523	CC	CCC
-recovered pasa_asmbl_35024.p1, internal, 63021, 63287
Couldn't classify 22996, 23018
Couldn't classify 27574, 27690
Sorry, prediction pasa_asmbl_35015.p1 fails validation.
(TTG)	 CT	22996-23018	GT	AGG
(GTT)	 AG	23127-23217	GT	GGG
(GGT)	 AG	24199-25653	GT	AGG
(GTG)	 AG	25762-27438	GT	AGG
(GAG)	 AG	27574-27690	CA	GCC
-recovered pasa_asmbl_35015.p1, internal, 23127, 23217
-recovered pasa_asmbl_35015.p1, internal, 24199, 25653
-recovered pasa_asmbl_35015.p1, internal, 25762, 27438
Valid prediction for HiQ_model.g36912.t1
Valid prediction for Augustus_model.g36910.t1
Valid prediction for snap_scaffold_26-snap.1238-T1
Valid prediction for snap_scaffold_26-snap.1249-T1
Valid prediction for snap_scaffold_26-snap.1260-T1
Valid prediction for GlimmerHMM_glimmerT_55709-T1
Valid prediction for snap_scaffold_26-snap.1231-T1
Valid prediction for HiQ_model.g36920.t1
Valid prediction for snap_scaffold_26-snap.1271-T1
Valid prediction for HiQ_model.g36925.t1
Valid prediction for Augustus_model.g36918.t1
Valid prediction for GlimmerHMM_glimmerT_55711-T1
Valid prediction for snap_scaffold_26-snap.1239-T1
Valid prediction for pasa_asmbl_35018.p1
Valid prediction for snap_scaffold_26-snap.1226-T1
Valid prediction for GlimmerHMM_glimmerT_55702-T1
Valid prediction for GlimmerHMM_glimmerT_55727-T1
Couldn't classify 59403, 59642
Couldn't classify 61205, 61339
Sorry, prediction pasa_asmbl_35027.p1 fails validation.
(GGT)	 AG	59403-59642	GT	AGG
(TCA)	 AG	59737-59822	GT	AGG
(CTT)	 AG	60413-60546	GT	AGG
(AGG)	 AG	60662-60830	GT	AGG
(TCC)	 AG	60927-61047	GT	AGG
(CCC)	 AG	61205-61339	CG	CCC
-recovered pasa_asmbl_35027.p1, internal, 59403, 59642
-recovered pasa_asmbl_35027.p1, internal, 59737, 59822
-recovered pasa_asmbl_35027.p1, internal, 60413, 60546
-recovered pasa_asmbl_35027.p1, internal, 60662, 60830
-recovered pasa_asmbl_35027.p1, internal, 60927, 61047
Valid prediction for HiQ_model.g36919.t1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_26-snap.1268-T1
Sorry, intron length (9) is less than minimum required (10)
Valid prediction for GlimmerHMM_glimmerT_55728-T1
Valid prediction for snap_scaffold_26-snap.1265-T1
Valid prediction for snap_scaffold_26-snap.1245-T1
Valid prediction for GlimmerHMM_glimmerT_55734-T1
Valid prediction for snap_scaffold_26-snap.1264-T1
Valid prediction for GlimmerHMM_glimmerT_55720-T1
Valid prediction for Augustus_model.g36927.t1
Valid prediction for HiQ_model.g36932.t1
Valid prediction for GlimmerHMM_glimmerT_55723-T1
Valid prediction for Augustus_model.g36926.t1
Valid prediction for snap_scaffold_26-snap.1252-T1
Valid prediction for Augustus_model.g36923.t1
Valid prediction for snap_scaffold_26-snap.1259-T1
Valid prediction for GlimmerHMM_glimmerT_55731-T1
Valid prediction for snap_scaffold_26-snap.1236-T1
Valid prediction for snap_scaffold_26-snap.1262-T1
Valid prediction for snap_scaffold_26-snap.1263-T1
Valid prediction for Augustus_model.g36916.t1
Valid prediction for GlimmerHMM_glimmerT_55730-T1
Valid prediction for Augustus_model.g36929.t1
Valid prediction for Augustus_model.g36934.t1
Valid prediction for snap_scaffold_26-snap.1257-T1
Valid prediction for GlimmerHMM_glimmerT_55716-T1
Valid prediction for CodingQuarry_transcript_40363-T1
Valid prediction for GlimmerHMM_glimmerT_55721-T1
Valid prediction for GlimmerHMM_glimmerT_55732-T1
Valid prediction for GlimmerHMM_glimmerT_55724-T1
Valid prediction for snap_scaffold_26-snap.1234-T1
Valid prediction for snap_scaffold_26-snap.1266-T1
Valid prediction for CodingQuarry_transcript_40364-T1
Valid prediction for snap_scaffold_26-snap.1256-T1
Valid prediction for GlimmerHMM_glimmerT_55729-T1
Valid prediction for Augustus_model.g36928.t1
Valid prediction for snap_scaffold_26-snap.1253-T1
Couldn't classify 155481, 155837
Sorry, prediction pasa_asmbl_35834.p1 fails validation.
(GTC)	 CA	155481-155837	AG	AAA
Valid prediction for Augustus_model.g36933.t1
Valid prediction for CodingQuarry_transcript_40365-T1
Valid prediction for snap_scaffold_26-snap.1241-T1
Valid prediction for Augustus_model.g36921.t1
Valid prediction for Augustus_model.g36917.t1
Valid prediction for snap_scaffold_26-snap.1270-T1
Valid prediction for snap_scaffold_26-snap.1233-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 30499, rend_intergenic: 24195  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 34343, rend_intergenic: 32258  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 41188, rend_intergenic: 35808  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 57640, rend_intergenic: 53820  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 77723, rend_intergenic: 72401  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 106130, rend_intergenic: 102047  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 144180, rend_intergenic: 133602  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 164088, rend_intergenic: 163190  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 177988, rend_intergenic: 170562  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 181551, rend_intergenic: 180279  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 187690
-exon list size: 602


building trellis

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99.8    
-found 31 predictions from path traversal
Error with prediction: snap lend_intergenic: 30499, rend_intergenic: 24195  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 34343, rend_intergenic: 32258  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 41188, rend_intergenic: 35808  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 57640, rend_intergenic: 53820  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 77723, rend_intergenic: 72401  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 106130, rend_intergenic: 102047  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 144180, rend_intergenic: 133602  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 164088, rend_intergenic: 163190  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 177988, rend_intergenic: 170562  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 181551, rend_intergenic: 180279  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 27 predictions persist after filtering for low support