-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_26/scaffold_26_5184584-5304511

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for pasa_asmbl_34974.p1
Valid prediction for GlimmerHMM_glimmerT_55656-T1
Valid prediction for GlimmerHMM_glimmerT_55663-T1
Valid prediction for Augustus_model.g36869.t1
Valid prediction for snap_scaffold_26-snap.1161-T1
Valid prediction for GlimmerHMM_glimmerT_55641-T1
Valid prediction for GlimmerHMM_glimmerT_55652-T1
Valid prediction for snap_scaffold_26-snap.1160-T1
Valid prediction for snap_scaffold_26-snap.1175-T1
Valid prediction for snap_scaffold_26-snap.1144-T1
Valid prediction for snap_scaffold_26-snap.1168-T1
Valid prediction for snap_scaffold_26-snap.1154-T1
Valid prediction for Augustus_model.g36867.t1
Valid prediction for snap_scaffold_26-snap.1156-T1
Valid prediction for GlimmerHMM_glimmerT_55661-T1
Valid prediction for snap_scaffold_26-snap.1148-T1
Valid prediction for snap_scaffold_26-snap.1171-T1
Sorry, intron length (9) is less than minimum required (10)
Valid prediction for snap_scaffold_26-snap.1164-T1
Valid prediction for Augustus_model.g36864.t1
Valid prediction for GlimmerHMM_glimmerT_55650-T1
Valid prediction for snap_scaffold_26-snap.1147-T1
Valid prediction for snap_scaffold_26-snap.1174-T1
Valid prediction for Augustus_model.g36862.t1
Valid prediction for CodingQuarry_transcript_40342-T1
Valid prediction for Augustus_model.g36873.t1
Valid prediction for GlimmerHMM_glimmerT_55646-T1
Valid prediction for GlimmerHMM_glimmerT_55645-T1
Valid prediction for snap_scaffold_26-snap.1166-T1
Valid prediction for Augustus_model.g36870.t1
Valid prediction for GlimmerHMM_glimmerT_55642-T1
Valid prediction for snap_scaffold_26-snap.1150-T1
Valid prediction for snap_scaffold_26-snap.1151-T1
Valid prediction for Augustus_model.g36860.t1
Valid prediction for HiQ_model.g36872.t1
Valid prediction for GlimmerHMM_glimmerT_55657-T1
Valid prediction for snap_scaffold_26-snap.1158-T1
Valid prediction for snap_scaffold_26-snap.1159-T1
Valid prediction for GlimmerHMM_glimmerT_55649-T1
Valid prediction for HiQ_model.g36866.t1
Valid prediction for snap_scaffold_26-snap.1153-T1
Valid prediction for GlimmerHMM_glimmerT_55647-T1
Valid prediction for GlimmerHMM_glimmerT_55655-T1
Valid prediction for GlimmerHMM_glimmerT_55653-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_26-snap.1169-T1
Valid prediction for Augustus_model.g36871.t1
Valid prediction for Augustus_model.g36863.t1
Valid prediction for GlimmerHMM_glimmerT_55654-T1
Valid prediction for snap_scaffold_26-snap.1149-T1
Valid prediction for Augustus_model.g36865.t1
Valid prediction for Augustus_model.g36868.t1
Valid prediction for GlimmerHMM_glimmerT_55662-T1
Valid prediction for snap_scaffold_26-snap.1170-T1
Valid prediction for snap_scaffold_26-snap.1167-T1
Valid prediction for GlimmerHMM_glimmerT_55660-T1
Valid prediction for snap_scaffold_26-snap.1173-T1
Valid prediction for GlimmerHMM_glimmerT_55643-T1
Valid prediction for GlimmerHMM_glimmerT_55651-T1
Valid prediction for snap_scaffold_26-snap.1157-T1
Valid prediction for snap_scaffold_26-snap.1145-T1
Valid prediction for GlimmerHMM_glimmerT_55644-T1
Valid prediction for GlimmerHMM_glimmerT_55659-T1
Valid prediction for GlimmerHMM_glimmerT_55648-T1
Valid prediction for snap_scaffold_26-snap.1155-T1
Sorry, intron length (3) is less than minimum required (10)
Valid prediction for snap_scaffold_26-snap.1146-T1
Valid prediction for snap_scaffold_26-snap.1163-T1
Valid prediction for snap_scaffold_26-snap.1172-T1
Valid prediction for snap_scaffold_26-snap.1165-T1
Valid prediction for GlimmerHMM_glimmerT_55658-T1
Valid prediction for Augustus_model.g36859.t1
Valid prediction for Augustus_model.g36861.t1
Valid prediction for snap_scaffold_26-snap.1162-T1
Sorry, intron length (5) is less than minimum required (10)
Valid prediction for snap_scaffold_26-snap.1152-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 9338, rend_intergenic: 5149  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 14235, rend_intergenic: 10710  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 18757, rend_intergenic: 15323  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 20984, rend_intergenic: 19090  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 27304, rend_intergenic: 25169  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 36229, rend_intergenic: 28551  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 43622, rend_intergenic: 40201  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 54324, rend_intergenic: 52741  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 77166, rend_intergenic: 71124  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 88149, rend_intergenic: 79890  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 100853, rend_intergenic: 96470  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 119928
-exon list size: 275


building trellis

0.4    
0.7    
1.1    
1.4    
1.8    
2.2    
2.5    
2.9    
3.2    
3.6    
4.0    
4.3    
4.7    
5.1    
5.4    
5.8    
6.1    
6.5    
6.9    
7.2    
7.6    
7.9    
8.3    
8.7    
9.0    
9.4    
9.7    
10.1    
10.5    
10.8    
11.2    
11.6    
11.9    
12.3    
12.6    
13.0    
13.4    
13.7    
14.1    
14.4    
14.8    
15.2    
15.5    
15.9    
16.2    
16.6    
17.0    
17.3    
17.7    
18.1    
18.4    
18.8    
19.1    
19.5    
19.9    
20.2    
20.6    
20.9    
21.3    
21.7    
22.0    
22.4    
22.7    
23.1    
23.5    
23.8    
24.2    
24.5    
24.9    
25.3    
25.6    
26.0    
26.4    
26.7    
27.1    
27.4    
27.8    
28.2    
28.5    
28.9    
29.2    
29.6    
30.0    
30.3    
30.7    
31.0    
31.4    
31.8    
32.1    
32.5    
32.9    
33.2    
33.6    
33.9    
34.3    
34.7    
35.0    
35.4    
35.7    
36.1    
36.5    
36.8    
37.2    
37.5    
37.9    
38.3    
38.6    
39.0    
39.4    
39.7    
40.1    
40.4    
40.8    
41.2    
41.5    
41.9    
42.2    
42.6    
43.0    
43.3    
43.7    
44.0    
44.4    
44.8    
45.1    
45.5    
45.8    
46.2    
46.6    
46.9    
47.3    
47.7    
48.0    
48.4    
48.7    
49.1    
49.5    
49.8    
50.2    
50.5    
50.9    
51.3    
51.6    
52.0    
52.3    
52.7    
53.1    
53.4    
53.8    
54.2    
54.5    
54.9    
55.2    
55.6    
56.0    
56.3    
56.7    
57.0    
57.4    
57.8    
58.1    
58.5    
58.8    
59.2    
59.6    
59.9    
60.3    
60.6    
61.0    
61.4    
61.7    
62.1    
62.5    
62.8    
63.2    
63.5    
63.9    
64.3    
64.6    
65.0    
65.3    
65.7    
66.1    
66.4    
66.8    
67.1    
67.5    
67.9    
68.2    
68.6    
69.0    
69.3    
69.7    
70.0    
70.4    
70.8    
71.1    
71.5    
71.8    
72.2    
72.6    
72.9    
73.3    
73.6    
74.0    
74.4    
74.7    
75.1    
75.5    
75.8    
76.2    
76.5    
76.9    
77.3    
77.6    
78.0    
78.3    
78.7    
79.1    
79.4    
79.8    
80.1    
80.5    
80.9    
81.2    
81.6    
81.9    
82.3    
82.7    
83.0    
83.4    
83.8    
84.1    
84.5    
84.8    
85.2    
85.6    
85.9    
86.3    
86.6    
87.0    
87.4    
87.7    
88.1    
88.4    
88.8    
89.2    
89.5    
89.9    
90.3    
90.6    
91.0    
91.3    
91.7    
92.1    
92.4    
92.8    
93.1    
93.5    
93.9    
94.2    
94.6    
94.9    
95.3    
95.7    
96.0    
96.4    
96.8    
97.1    
97.5    
97.8    
98.2    
98.6    
98.9    
99.3    
99.6    
-found 24 predictions from path traversal
Error with prediction: snap lend_intergenic: 9338, rend_intergenic: 5149  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 14235, rend_intergenic: 10710  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 18757, rend_intergenic: 15323  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 20984, rend_intergenic: 19090  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 27304, rend_intergenic: 25169  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 36229, rend_intergenic: 28551  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 43622, rend_intergenic: 40201  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 54324, rend_intergenic: 52741  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 77166, rend_intergenic: 71124  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 88149, rend_intergenic: 79890  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 100853, rend_intergenic: 96470  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 16 predictions persist after filtering for low support