-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_26/scaffold_26_4862573-5022874

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_26-snap.1083-T1
Valid prediction for snap_scaffold_26-snap.1088-T1
Valid prediction for snap_scaffold_26-snap.1068-T1
Valid prediction for snap_scaffold_26-snap.1099-T1
Valid prediction for snap_scaffold_26-snap.1098-T1
Valid prediction for GlimmerHMM_glimmerT_55591-T1
Valid prediction for GlimmerHMM_glimmerT_55604-T1
Valid prediction for Augustus_model.g36842.t1
Valid prediction for snap_scaffold_26-snap.1066-T1
Valid prediction for snap_scaffold_26-snap.1079-T1
Valid prediction for snap_scaffold_26-snap.1093-T1
Valid prediction for snap_scaffold_26-snap.1089-T1
Valid prediction for GlimmerHMM_glimmerT_55611-T1
Valid prediction for Augustus_model.g36830.t1
Valid prediction for Augustus_model.g36826.t1
Valid prediction for snap_scaffold_26-snap.1074-T1
Valid prediction for snap_scaffold_26-snap.1064-T1
Valid prediction for GlimmerHMM_glimmerT_55597-T1
Valid prediction for snap_scaffold_26-snap.1103-T1
Valid prediction for GlimmerHMM_glimmerT_55600-T1
Valid prediction for snap_scaffold_26-snap.1092-T1
Valid prediction for GlimmerHMM_glimmerT_55592-T1
Valid prediction for snap_scaffold_26-snap.1090-T1
Valid prediction for GlimmerHMM_glimmerT_55594-T1
Valid prediction for GlimmerHMM_glimmerT_55602-T1
Valid prediction for snap_scaffold_26-snap.1087-T1
Valid prediction for Augustus_model.g36839.t1
Valid prediction for snap_scaffold_26-snap.1072-T1
Valid prediction for GlimmerHMM_glimmerT_55603-T1
Valid prediction for snap_scaffold_26-snap.1085-T1
Valid prediction for Augustus_model.g36836.t1
Valid prediction for snap_scaffold_26-snap.1069-T1
Valid prediction for snap_scaffold_26-snap.1070-T1
Valid prediction for GlimmerHMM_glimmerT_55609-T1
Valid prediction for snap_scaffold_26-snap.1081-T1
Valid prediction for snap_scaffold_26-snap.1094-T1
Valid prediction for GlimmerHMM_glimmerT_55595-T1
Valid prediction for snap_scaffold_26-snap.1097-T1
Valid prediction for Augustus_model.g36827.t1
Valid prediction for Augustus_model.g36829.t1
Valid prediction for Augustus_model.g36825.t1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for Augustus_model.g36840.t1
Valid prediction for GlimmerHMM_glimmerT_55608-T1
Valid prediction for Augustus_model.g36841.t1
Valid prediction for GlimmerHMM_glimmerT_55616-T1
Valid prediction for snap_scaffold_26-snap.1086-T1
Valid prediction for snap_scaffold_26-snap.1067-T1
Valid prediction for GlimmerHMM_glimmerT_55613-T1
Valid prediction for Augustus_model.g36835.t1
Valid prediction for snap_scaffold_26-snap.1104-T1
Valid prediction for Augustus_model.g36832.t1
Valid prediction for snap_scaffold_26-snap.1065-T1
Valid prediction for Augustus_model.g36831.t1
Valid prediction for GlimmerHMM_glimmerT_55607-T1
Couldn't classify 75806, 75962
Couldn't classify 77782, 77832
Sorry, prediction pasa_asmbl_35898.p1 fails validation.
(TTC)	 AG	75806-75962	GT	AGG
(GCA)	 AG	76580-76728	GT	AAG
(ATG)	 AG	77782-77832	AA	GCA
-recovered pasa_asmbl_35898.p1, internal, 75806, 75962
-recovered pasa_asmbl_35898.p1, internal, 76580, 76728
Valid prediction for GlimmerHMM_glimmerT_55614-T1
Valid prediction for Augustus_model.g36838.t1
Valid prediction for snap_scaffold_26-snap.1077-T1
Valid prediction for Augustus_model.g36828.t1
Valid prediction for snap_scaffold_26-snap.1096-T1
Valid prediction for GlimmerHMM_glimmerT_55596-T1
Valid prediction for snap_scaffold_26-snap.1105-T1
Valid prediction for snap_scaffold_26-snap.1095-T1
Valid prediction for GlimmerHMM_glimmerT_55615-T1
Valid prediction for snap_scaffold_26-snap.1084-T1
Valid prediction for snap_scaffold_26-snap.1080-T1
Valid prediction for snap_scaffold_26-snap.1100-T1
Valid prediction for snap_scaffold_26-snap.1091-T1
Valid prediction for GlimmerHMM_glimmerT_55610-T1
Valid prediction for GlimmerHMM_glimmerT_55599-T1
Valid prediction for snap_scaffold_26-snap.1063-T1
Valid prediction for GlimmerHMM_glimmerT_55601-T1
Valid prediction for snap_scaffold_26-snap.1071-T1
Valid prediction for snap_scaffold_26-snap.1107-T1
Valid prediction for GlimmerHMM_glimmerT_55605-T1
Valid prediction for GlimmerHMM_glimmerT_55598-T1
Valid prediction for Augustus_model.g36837.t1
Valid prediction for snap_scaffold_26-snap.1082-T1
Valid prediction for GlimmerHMM_glimmerT_55612-T1
Valid prediction for snap_scaffold_26-snap.1102-T1
Valid prediction for Augustus_model.g36834.t1
Valid prediction for GlimmerHMM_glimmerT_55606-T1
Valid prediction for snap_scaffold_26-snap.1073-T1
Valid prediction for GlimmerHMM_glimmerT_55593-T1
Valid prediction for snap_scaffold_26-snap.1076-T1
Valid prediction for Augustus_model.g36833.t1
Valid prediction for snap_scaffold_26-snap.1101-T1
Valid prediction for GlimmerHMM_glimmerT_55617-T1
Valid prediction for snap_scaffold_26-snap.1075-T1
Valid prediction for snap_scaffold_26-snap.1078-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 9486, rend_intergenic: 7501  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 12405, rend_intergenic: 10772  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 40775, rend_intergenic: 35933  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 42518, rend_intergenic: 40970  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 59566, rend_intergenic: 53602  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 69503, rend_intergenic: 66253  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 73815, rend_intergenic: 69711  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 78957, rend_intergenic: 76131  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 82521, rend_intergenic: 79196  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 104193, rend_intergenic: 89988  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 106036, rend_intergenic: 104834  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 118571, rend_intergenic: 106068  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 126054, rend_intergenic: 124287  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 130005, rend_intergenic: 128549  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 154093, rend_intergenic: 150345  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 160302
-exon list size: 365


building trellis

0.3    
0.5    
0.8    
1.1    
1.4    
1.6    
1.9    
2.2    
2.5    
2.7    
3.0    
3.3    
3.5    
3.8    
4.1    
4.4    
4.6    
4.9    
5.2    
5.4    
5.7    
6.0    
6.3    
6.5    
6.8    
7.1    
7.4    
7.6    
7.9    
8.2    
8.4    
8.7    
9.0    
9.3    
9.5    
9.8    
10.1    
10.4    
10.6    
10.9    
11.2    
11.4    
11.7    
12.0    
12.3    
12.5    
12.8    
13.1    
13.4    
13.6    
13.9    
14.2    
14.4    
14.7    
15.0    
15.3    
15.5    
15.8    
16.1    
16.3    
16.6    
16.9    
17.2    
17.4    
17.7    
18.0    
18.3    
18.5    
18.8    
19.1    
19.3    
19.6    
19.9    
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20.7    
21.0    
21.3    
21.5    
21.8    
22.1    
22.3    
22.6    
22.9    
23.2    
23.4    
23.7    
24.0    
24.3    
24.5    
24.8    
25.1    
25.3    
25.6    
25.9    
26.2    
26.4    
26.7    
27.0    
27.2    
27.5    
27.8    
28.1    
28.3    
28.6    
28.9    
29.2    
29.4    
29.7    
30.0    
30.2    
30.5    
30.8    
31.1    
31.3    
31.6    
31.9    
32.2    
32.4    
32.7    
33.0    
33.2    
33.5    
33.8    
34.1    
34.3    
34.6    
34.9    
35.1    
35.4    
35.7    
36.0    
36.2    
36.5    
36.8    
37.1    
37.3    
37.6    
37.9    
38.1    
38.4    
38.7    
39.0    
39.2    
39.5    
39.8    
40.1    
40.3    
40.6    
40.9    
41.1    
41.4    
41.7    
42.0    
42.2    
42.5    
42.8    
43.1    
43.3    
43.6    
43.9    
44.1    
44.4    
44.7    
45.0    
45.2    
45.5    
45.8    
46.0    
46.3    
46.6    
46.9    
47.1    
47.4    
47.7    
48.0    
48.2    
48.5    
48.8    
49.0    
49.3    
49.6    
49.9    
50.1    
50.4    
50.7    
51.0    
51.2    
51.5    
51.8    
52.0    
52.3    
52.6    
52.9    
53.1    
53.4    
53.7    
54.0    
54.2    
54.5    
54.8    
55.0    
55.3    
55.6    
55.9    
56.1    
56.4    
56.7    
56.9    
57.2    
57.5    
57.8    
58.0    
58.3    
58.6    
58.9    
59.1    
59.4    
59.7    
59.9    
60.2    
60.5    
60.8    
61.0    
61.3    
61.6    
61.9    
62.1    
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62.9    
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63.8    
64.0    
64.3    
64.6    
64.9    
65.1    
65.4    
65.7    
65.9    
66.2    
66.5    
66.8    
67.0    
67.3    
67.6    
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68.1    
68.4    
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69.2    
69.5    
69.8    
70.0    
70.3    
70.6    
70.8    
71.1    
71.4    
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72.2    
72.5    
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73.0    
73.3    
73.6    
73.8    
74.1    
74.4    
74.7    
74.9    
75.2    
75.5    
75.7    
76.0    
76.3    
76.6    
76.8    
77.1    
77.4    
77.7    
77.9    
78.2    
78.5    
78.7    
79.0    
79.3    
79.6    
79.8    
80.1    
80.4    
80.7    
80.9    
81.2    
81.5    
81.7    
82.0    
82.3    
82.6    
82.8    
83.1    
83.4    
83.7    
83.9    
84.2    
84.5    
84.7    
85.0    
85.3    
85.6    
85.8    
86.1    
86.4    
86.6    
86.9    
87.2    
87.5    
87.7    
88.0    
88.3    
88.6    
88.8    
89.1    
89.4    
89.6    
89.9    
90.2    
90.5    
90.7    
91.0    
91.3    
91.6    
91.8    
92.1    
92.4    
92.6    
92.9    
93.2    
93.5    
93.7    
94.0    
94.3    
94.6    
94.8    
95.1    
95.4    
95.6    
95.9    
96.2    
96.5    
96.7    
97.0    
97.3    
97.5    
97.8    
98.1    
98.4    
98.6    
98.9    
99.2    
99.5    
99.7    
-found 33 predictions from path traversal
Error with prediction: snap lend_intergenic: 9486, rend_intergenic: 7501  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 12405, rend_intergenic: 10772  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 40775, rend_intergenic: 35933  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 42518, rend_intergenic: 40970  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 59566, rend_intergenic: 53602  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 69503, rend_intergenic: 66253  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 73815, rend_intergenic: 69711  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 78957, rend_intergenic: 76131  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 82521, rend_intergenic: 79196  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 104193, rend_intergenic: 89988  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 106036, rend_intergenic: 104834  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 118571, rend_intergenic: 106068  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 126054, rend_intergenic: 124287  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 130005, rend_intergenic: 128549  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 154093, rend_intergenic: 150345  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 19 predictions persist after filtering for low support