-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_26/scaffold_26_4281856-4507870 -reading genomic sequence. ** Processing features (+) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: +) -loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_55505-T1 Valid prediction for snap_scaffold_26-snap.969-T1 Valid prediction for GlimmerHMM_glimmerT_55527-T1 Valid prediction for snap_scaffold_26-snap.958-T1 Valid prediction for Augustus_model.g36769.t1 Valid prediction for snap_scaffold_26-snap.950-T1 Valid prediction for snap_scaffold_26-snap.951-T1 Valid prediction for snap_scaffold_26-snap.943-T1 Valid prediction for GlimmerHMM_glimmerT_55532-T1 Couldn't classify 177311, 177322 Sorry, prediction pasa_asmbl_34905.p1 fails validation. (ATG) TT 174220-174468 GT AGG (GCT) AG 174610-174833 GT AGG (CCG) AG 174947-175046 GT AGG (ACT) AG 175140-175257 GT GGG (GAA) AG 175405-175547 GT AGG (GGC) AG 175700-175852 GT AGG (TTG) AG 176219-176313 GT AGG (GGT) AG 176430-176670 GT AGG (GCG) AG 176773-176865 GT AGG (GTG) AG 177311-177322 TG TCT -recovered pasa_asmbl_34905.p1, initial, 174220, 174468 -recovered pasa_asmbl_34905.p1, internal, 174610, 174833 -recovered pasa_asmbl_34905.p1, internal, 174947, 175046 -recovered pasa_asmbl_34905.p1, internal, 175140, 175257 -recovered pasa_asmbl_34905.p1, internal, 175405, 175547 -recovered pasa_asmbl_34905.p1, internal, 175700, 175852 -recovered pasa_asmbl_34905.p1, internal, 176219, 176313 -recovered pasa_asmbl_34905.p1, internal, 176430, 176670 -recovered pasa_asmbl_34905.p1, internal, 176773, 176865 Valid prediction for pasa_asmbl_34903.p1 Valid prediction for snap_scaffold_26-snap.976-T1 Couldn't classify 184645, 184687 Sorry, prediction pasa_asmbl_34912.p1 fails validation. (CAT) CT 184645-184687 GT ATG (ATG) AG 184790-184911 GT CAG (GTG) AG 185043-185196 GT AGG (ATT) AG 188085-188165 GT CAG (ATA) AG 188246-188313 GT AGG (CTG) AG 188395-188586 GT GAG add_exon() Sorry, pasa_asmbl_34912.p1 184790-184911-initial-1 is invalid. -recovered pasa_asmbl_34912.p1, initial, 184790, 184911 -recovered pasa_asmbl_34912.p1, terminal, 188395, 188586 -recovered pasa_asmbl_34912.p1, internal, 184790, 184911 -recovered pasa_asmbl_34912.p1, internal, 185043, 185196 -recovered pasa_asmbl_34912.p1, internal, 188085, 188165 -recovered pasa_asmbl_34912.p1, internal, 188246, 188313 -recovered pasa_asmbl_34912.p1, internal, 188395, 188586 Valid prediction for HiQ_model.g36785.t1 Valid prediction for snap_scaffold_26-snap.949-T1 Couldn't classify 71009, 71031 Couldn't classify 71722, 71788 Sorry, prediction pasa_asmbl_34884.p1 fails validation. (AGG) CC 71009-71031 GT GGG (GAG) AG 71181-71483 GT AGG (GTA) AG 71722-71788 GA GAG -recovered pasa_asmbl_34884.p1, internal, 71181, 71483 Valid prediction for GlimmerHMM_glimmerT_55522-T1 Valid prediction for Augustus_model.g36779.t1 Couldn't classify 75565, 75651 Couldn't classify 76256, 76312 Sorry, prediction pasa_asmbl_35305.p1 fails validation. (CTG) AC 75565-75651 GT CGG (GTT) AG 75777-75953 GT AGG (GAG) AG 76256-76312 CT GGC -recovered pasa_asmbl_35305.p1, internal, 75777, 75953 Valid prediction for Augustus_model.g36773.t1 Valid prediction for HiQ_model.g36774.t1 Valid prediction for Augustus_model.g36766.t1 Valid prediction for Augustus_model.g36783.t1 Valid prediction for CodingQuarry_transcript_40323-T1 Valid prediction for CodingQuarry_transcript_40320-T1 Valid prediction for HiQ_model.g36787.t1 Valid prediction for HiQ_model.g36763.t1 Couldn't classify 183839, 183932 Couldn't classify 184550, 184585 Sorry, prediction pasa_asmbl_34911.p1 fails validation. (GTG) TG 183839-183932 GT AGG (AGT) AG 184054-184116 GT TGG (AAG) AG 184219-184349 GT AGG (ATG) AG 184550-184585 GT CAG -recovered pasa_asmbl_34911.p1, initial, 184550, 184585 -recovered pasa_asmbl_34911.p1, internal, 184054, 184116 -recovered pasa_asmbl_34911.p1, internal, 184219, 184349 -recovered pasa_asmbl_34911.p1, internal, 184550, 184585 Valid prediction for CodingQuarry_transcript_40322-T1 Valid prediction for snap_scaffold_26-snap.954-T1 Valid prediction for snap_scaffold_26-snap.948-T1 Couldn't classify 200037, 200234 Sorry, prediction pasa_asmbl_34917.p1 fails validation. (GAA) GT 200037-200234 GT AGG (ATT) AG 200761-200994 GT AGG (AAA) AG 201233-201304 GT AGG (CTG) AG 201743-202015 TG AGT -recovered pasa_asmbl_34917.p1, terminal, 201743, 202015 -recovered pasa_asmbl_34917.p1, internal, 200761, 200994 -recovered pasa_asmbl_34917.p1, internal, 201233, 201304 Valid prediction for snap_scaffold_26-snap.970-T1 Couldn't classify 177685, 177856 Sorry, prediction pasa_asmbl_34908.p1 fails validation. (ACC) AG 177685-177856 GT GGG (GTG) AG 177988-178054 GT AGG (GTG) AG 178126-178240 TT GAT -recovered pasa_asmbl_34908.p1, terminal, 178126, 178240 -recovered pasa_asmbl_34908.p1, internal, 177685, 177856 -recovered pasa_asmbl_34908.p1, internal, 177988, 178054 Valid prediction for CodingQuarry_transcript_40314-T1 Valid prediction for GlimmerHMM_glimmerT_55515-T1 Couldn't classify 166209, 166335 Sorry, prediction pasa_asmbl_34902.p2 fails validation. (ATG) TC 162538-162605 GT TCG (GAC) AG 163917-163970 GT AGG (GGA) AG 164184-164218 GT AGG (AAA) AG 164466-164534 GT AAG (ACG) AG 164637-164727 GT TCG (GGG) AG 164837-164945 GT AGG (GTG) AG 165187-165346 GT TGG (GAA) AG 165988-166099 GT GTG (CAA) AG 166209-166335 TA GGT -recovered pasa_asmbl_34902.p2, initial, 162538, 162605 -recovered pasa_asmbl_34902.p2, internal, 163917, 163970 -recovered pasa_asmbl_34902.p2, internal, 164184, 164218 -recovered pasa_asmbl_34902.p2, internal, 164466, 164534 -recovered pasa_asmbl_34902.p2, internal, 164637, 164727 -recovered pasa_asmbl_34902.p2, internal, 164837, 164945 -recovered pasa_asmbl_34902.p2, internal, 165187, 165346 -recovered pasa_asmbl_34902.p2, internal, 165988, 166099 Valid prediction for snap_scaffold_26-snap.933-T1 Valid prediction for Augustus_model.g36767.t1 Valid prediction for snap_scaffold_26-snap.957-T1 Valid prediction for snap_scaffold_26-snap.967-T1 Valid prediction for HiQ_model.g36781.t1 Valid prediction for snap_scaffold_26-snap.941-T1 Valid prediction for GlimmerHMM_glimmerT_55523-T1 Valid prediction for pasa_asmbl_34881.p1 Valid prediction for snap_scaffold_26-snap.945-T1 Valid prediction for snap_scaffold_26-snap.956-T1 Couldn't classify 100960, 101001 Couldn't classify 102440, 102451 Sorry, prediction pasa_asmbl_34892.p1 fails validation. (TCC) AC 100960-101001 GT AGG (GAT) AG 101131-101175 GT TGG (ATG) AG 101776-101886 GT AGG (TTT) AG 102254-102346 GT AGG (AGG) AG 102440-102451 GT GGG -recovered pasa_asmbl_34892.p1, initial, 101776, 101886 -recovered pasa_asmbl_34892.p1, internal, 101131, 101175 -recovered pasa_asmbl_34892.p1, internal, 101776, 101886 -recovered pasa_asmbl_34892.p1, internal, 102254, 102346 -recovered pasa_asmbl_34892.p1, internal, 102440, 102451 Valid prediction for snap_scaffold_26-snap.964-T1 Valid prediction for Augustus_model.g36780.t1 Valid prediction for HiQ_model.g36771.t1 Valid prediction for Augustus_model.g36772.t1 Couldn't classify 97134, 97946 Sorry, prediction pasa_asmbl_34890.p1 fails validation. (CCC) TC 97134-97946 CT GAC Couldn't classify 78315, 78412 Sorry, prediction pasa_asmbl_34887.p1 fails validation. (TCC) GT 78315-78412 GT AGG (TAT) AG 78518-78650 GT AGG (GAT) AG 78871-79069 GT AGG (CCT) AG 79344-79472 GT TGG (GTA) AG 79596-79789 GT AGG (GTC) AG 80054-80254 GT AGG (GAT) AG 80489-80614 GT TGG (GTG) AG 80742-80831 GT AGG (AGC) AG 80931-81056 CG GAC -recovered pasa_asmbl_34887.p1, terminal, 80931, 81056 -recovered pasa_asmbl_34887.p1, internal, 78518, 78650 -recovered pasa_asmbl_34887.p1, internal, 78871, 79069 -recovered pasa_asmbl_34887.p1, internal, 79344, 79472 -recovered pasa_asmbl_34887.p1, internal, 79596, 79789 -recovered pasa_asmbl_34887.p1, internal, 80054, 80254 -recovered pasa_asmbl_34887.p1, internal, 80489, 80614 -recovered pasa_asmbl_34887.p1, internal, 80742, 80831 Valid prediction for Augustus_model.g36776.t1 Valid prediction for snap_scaffold_26-snap.936-T1 Valid prediction for snap_scaffold_26-snap.938-T1 Couldn't classify 76391, 76479 Couldn't classify 77642, 77676 Sorry, prediction pasa_asmbl_34886.p1 fails validation. (CTG) TG 76391-76479 GT AGG (GTA) AG 76892-77112 GT AGG (TGT) AG 77642-77676 AA TGA -recovered pasa_asmbl_34886.p1, internal, 76892, 77112 Valid prediction for GlimmerHMM_glimmerT_55524-T1 Valid prediction for GlimmerHMM_glimmerT_55512-T1 Valid prediction for snap_scaffold_26-snap.935-T1 Couldn't classify 92044, 92180 Sorry, prediction CodingQuarry_transcript_40319-T1 fails validation. (ATG) AC 87127-87150 GT AAG (TAT) AG 87542-87621 GT AGG (ACG) AG 87764-87917 GT AGG (GTG) AG 88055-88164 GT AGG (GTA) AG 88339-88510 GT AGG (GTG) AG 89617-89706 GT ATG (CAT) AG 89903-90019 GT AGG (ATG) AG 90199-90276 GT AGG (AAA) AG 90455-90544 GT AGG (GAG) AG 90831-90961 GT AGG (ATG) AG 91095-91220 GT AGG (GTA) AG 91747-91931 GT TGG (CAG) CC 92044-92180 GT AGG (GCT) AG 92346-92513 GT AGG (GCA) AG 92837-92923 GA AGG -recovered CodingQuarry_transcript_40319-T1, initial, 87127, 87150 -recovered CodingQuarry_transcript_40319-T1, initial, 90199, 90276 add_exon() Sorry, CodingQuarry_transcript_40319-T1 91095-91220-initial-1 is invalid. -recovered CodingQuarry_transcript_40319-T1, initial, 91095, 91220 add_exon() Sorry, CodingQuarry_transcript_40319-T1 91095-91220-terminal-1 is invalid. -recovered CodingQuarry_transcript_40319-T1, terminal, 91095, 91220 -recovered CodingQuarry_transcript_40319-T1, terminal, 92837, 92923 -recovered CodingQuarry_transcript_40319-T1, internal, 87542, 87621 -recovered CodingQuarry_transcript_40319-T1, internal, 87764, 87917 -recovered CodingQuarry_transcript_40319-T1, internal, 88055, 88164 -recovered CodingQuarry_transcript_40319-T1, internal, 88339, 88510 -recovered CodingQuarry_transcript_40319-T1, internal, 89617, 89706 -recovered CodingQuarry_transcript_40319-T1, internal, 89903, 90019 -recovered CodingQuarry_transcript_40319-T1, internal, 90199, 90276 -recovered CodingQuarry_transcript_40319-T1, internal, 90455, 90544 -recovered CodingQuarry_transcript_40319-T1, internal, 90831, 90961 -recovered CodingQuarry_transcript_40319-T1, internal, 91095, 91220 -recovered CodingQuarry_transcript_40319-T1, internal, 91747, 91931 -recovered CodingQuarry_transcript_40319-T1, internal, 92346, 92513 Valid prediction for GlimmerHMM_glimmerT_55534-T1 Valid prediction for CodingQuarry_transcript_40321-T1 Valid prediction for CodingQuarry_transcript_40318-T1 Couldn't classify 171852, 171977 Sorry, prediction pasa_asmbl_34904.p1 fails validation. (GTG) CT 171852-171977 GT TGG (AAG) AG 172085-172273 GT AGG (GAC) AG 172533-172601 AA AAA -recovered pasa_asmbl_34904.p1, terminal, 172533, 172601 -recovered pasa_asmbl_34904.p1, internal, 172085, 172273 Valid prediction for pasa_asmbl_34900.p1 Valid prediction for snap_scaffold_26-snap.966-T1 Valid prediction for Augustus_model.g36775.t1 Couldn't classify 102737, 102845 Sorry, prediction pasa_asmbl_34893.p1 fails validation. (TCA) CC 102737-102845 GT AGG (GTC) AG 102939-103108 GT AGG (GAG) AG 103247-103530 GT AGG (TTA) AG 103861-104010 GT CTG (CTA) AG 104311-104416 GT AGG (ATC) AG 104738-104818 GT AGG (GTG) AG 105385-105501 GA AGG -recovered pasa_asmbl_34893.p1, terminal, 105385, 105501 -recovered pasa_asmbl_34893.p1, internal, 102939, 103108 -recovered pasa_asmbl_34893.p1, internal, 103247, 103530 -recovered pasa_asmbl_34893.p1, internal, 103861, 104010 -recovered pasa_asmbl_34893.p1, internal, 104311, 104416 -recovered pasa_asmbl_34893.p1, internal, 104738, 104818 Valid prediction for HiQ_model.g36782.t1 Valid prediction for GlimmerHMM_glimmerT_55516-T1 Valid prediction for snap_scaffold_26-snap.973-T1 Couldn't classify 181398, 181537 Sorry, prediction pasa_asmbl_34909.p1 fails validation. (ATG) AA 178885-178926 GT AGG (TGC) AG 179347-179499 GT GCG (ATT) AG 180160-180212 GT TTG (TTT) AG 180758-180815 GT CTG (GGC) AG 181190-181295 GT TGG (GGG) AG 181398-181537 GG GAG -recovered pasa_asmbl_34909.p1, initial, 178885, 178926 -recovered pasa_asmbl_34909.p1, internal, 179347, 179499 -recovered pasa_asmbl_34909.p1, internal, 180160, 180212 -recovered pasa_asmbl_34909.p1, internal, 180758, 180815 -recovered pasa_asmbl_34909.p1, internal, 181190, 181295 Valid prediction for pasa_asmbl_34896.p1 Valid prediction for GlimmerHMM_glimmerT_55525-T1 Valid prediction for snap_scaffold_26-snap.960-T1 Valid prediction for GlimmerHMM_glimmerT_55519-T1 Valid prediction for GlimmerHMM_glimmerT_55506-T1 Valid prediction for snap_scaffold_26-snap.940-T1 Valid prediction for GlimmerHMM_glimmerT_55517-T1 Valid prediction for snap_scaffold_26-snap.961-T1 Couldn't classify 138097, 138257 Sorry, prediction pasa_asmbl_34895.p1 fails validation. (TCT) AG 138097-138257 GT AGG (AAA) AG 138350-138474 GT AGG (GTA) AG 138580-138709 GT AAG (AGA) AG 138852-139000 GT TGG (CGC) AG 139422-139609 GT CTG (ATT) AG 139912-140022 GT GTG (GGC) AG 140214-140315 GT AGG (GAT) AG 140474-140549 GT AGG (GCG) AG 140657-140784 GT TGG (ACT) AG 141044-141238 GA GAG -recovered pasa_asmbl_34895.p1, terminal, 141044, 141238 -recovered pasa_asmbl_34895.p1, internal, 138097, 138257 -recovered pasa_asmbl_34895.p1, internal, 138350, 138474 -recovered pasa_asmbl_34895.p1, internal, 138580, 138709 -recovered pasa_asmbl_34895.p1, internal, 138852, 139000 -recovered pasa_asmbl_34895.p1, internal, 139422, 139609 -recovered pasa_asmbl_34895.p1, internal, 139912, 140022 -recovered pasa_asmbl_34895.p1, internal, 140214, 140315 -recovered pasa_asmbl_34895.p1, internal, 140474, 140549 -recovered pasa_asmbl_34895.p1, internal, 140657, 140784 Couldn't classify 72919, 73044 Couldn't classify 73885, 74061 Sorry, prediction pasa_asmbl_34885.p1 fails validation. (CAG) CT 72919-73044 GT AGG (GTG) AG 73336-73545 GT AGG (GAG) AG 73885-74061 CG CCC -recovered pasa_asmbl_34885.p1, internal, 73336, 73545 Valid prediction for snap_scaffold_26-snap.937-T1 Valid prediction for GlimmerHMM_glimmerT_55528-T1 Valid prediction for GlimmerHMM_glimmerT_55504-T1 Valid prediction for pasa_asmbl_34897.p2 Valid prediction for Augustus_model.g36784.t1 Valid prediction for GlimmerHMM_glimmerT_55502-T1 Valid prediction for GlimmerHMM_glimmerT_55526-T1 Valid prediction for GlimmerHMM_glimmerT_55530-T1 Valid prediction for snap_scaffold_26-snap.965-T1 Valid prediction for GlimmerHMM_glimmerT_55536-T1 Valid prediction for snap_scaffold_26-snap.975-T1 Valid prediction for pasa_asmbl_34888.p1 Valid prediction for snap_scaffold_26-snap.952-T1 Valid prediction for snap_scaffold_26-snap.962-T1 Couldn't classify 99288, 99388 Couldn't classify 100800, 100845 Sorry, prediction pasa_asmbl_34891.p1 fails validation. (TGT) GC 99288-99388 GT AGG (GCG) AG 99496-99558 GT GGG (GAA) AG 99653-99709 GT CGG (TGC) AG 99794-99873 GT CGG (GTG) AG 99958-100066 GT AGG (TCT) AG 100149-100232 GT AGG (GTT) AG 100327-100384 GT AGG (ATT) AG 100531-100670 GT ATG (GTG) AG 100800-100845 CC CGC -recovered pasa_asmbl_34891.p1, internal, 99496, 99558 -recovered pasa_asmbl_34891.p1, internal, 99653, 99709 -recovered pasa_asmbl_34891.p1, internal, 99794, 99873 -recovered pasa_asmbl_34891.p1, internal, 99958, 100066 -recovered pasa_asmbl_34891.p1, internal, 100149, 100232 -recovered pasa_asmbl_34891.p1, internal, 100327, 100384 -recovered pasa_asmbl_34891.p1, internal, 100531, 100670 Valid prediction for CodingQuarry_transcript_40324-T1 -loading the search evidence (protein and EST search results, strand: +) -scoring exons (strand: +) ** Processing features (-) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: -) -loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_55520-T1 Valid prediction for GlimmerHMM_glimmerT_55510-T1 Valid prediction for CodingQuarry_transcript_40317-T1 Valid prediction for snap_scaffold_26-snap.942-T1 Valid prediction for Augustus_model.g36770.t1 Couldn't classify 34495, 34531 Couldn't classify 35412, 35523 Sorry, prediction pasa_asmbl_35553.p1 fails validation. (CGA) CC 34495-34531 GT CAG (TCT) AG 34654-34726 GT CTG (GTT) AG 34860-34967 GT AGG (GCT) AG 35067-35138 GT AGG (TCT) AG 35242-35331 GT AAG (CAC) AG 35412-35523 TT GCT -recovered pasa_asmbl_35553.p1, internal, 34654, 34726 -recovered pasa_asmbl_35553.p1, internal, 34860, 34967 -recovered pasa_asmbl_35553.p1, internal, 35067, 35138 -recovered pasa_asmbl_35553.p1, internal, 35242, 35331 Valid prediction for snap_scaffold_26-snap.977-T1 Valid prediction for GlimmerHMM_glimmerT_55533-T1 Valid prediction for HiQ_model.g36768.t1 Couldn't classify 215714, 215760 Sorry, prediction pasa_asmbl_35913.p1 fails validation. (ATG) GT 215183-215206 GT AAG (GTT) AG 215298-215402 GT AGG (CCT) AG 215501-215597 GT AGG (GCG) AG 215714-215760 GG TGG -recovered pasa_asmbl_35913.p1, initial, 215183, 215206 -recovered pasa_asmbl_35913.p1, internal, 215298, 215402 -recovered pasa_asmbl_35913.p1, internal, 215501, 215597 Valid prediction for GlimmerHMM_glimmerT_55537-T1 Valid prediction for Augustus_model.g36789.t1 Valid prediction for snap_scaffold_26-snap.947-T1 Valid prediction for snap_scaffold_26-snap.963-T1 Valid prediction for GlimmerHMM_glimmerT_55513-T1 Valid prediction for snap_scaffold_26-snap.968-T1 Valid prediction for GlimmerHMM_glimmerT_55529-T1 Valid prediction for CodingQuarry_transcript_40315-T1 Valid prediction for CodingQuarry_transcript_40325-T1 Valid prediction for GlimmerHMM_glimmerT_55508-T1 Valid prediction for GlimmerHMM_glimmerT_55531-T1 Valid prediction for CodingQuarry_transcript_40316-T1 Valid prediction for GlimmerHMM_glimmerT_55518-T1 Valid prediction for snap_scaffold_26-snap.971-T1 Valid prediction for Augustus_model.g36777.t1 Valid prediction for snap_scaffold_26-snap.934-T1 Valid prediction for snap_scaffold_26-snap.974-T1 Valid prediction for GlimmerHMM_glimmerT_55500-T1 Valid prediction for GlimmerHMM_glimmerT_55514-T1 Valid prediction for GlimmerHMM_glimmerT_55511-T1 Valid prediction for snap_scaffold_26-snap.939-T1 Valid prediction for Augustus_model.g36762.t1 Valid prediction for snap_scaffold_26-snap.946-T1 Couldn't classify 90092, 90269 Sorry, prediction pasa_asmbl_35550.p1 fails validation. (TCC) GT 90092-90269 GT CGG (GGT) AG 91102-91213 GT TGG (GTA) AG 91370-91463 GT CGG (GGC) AG 92466-92520 GT AGG (GTG) AG 95386-95526 GT CGG (GGG) AG 96039-96199 GT AGG (CGT) AG 96464-96562 GT AGG (CCC) AG 97463-97608 GT AGG (GGT) AG 97845-98016 GT CGG (GGA) AG 98346-98458 GT CGG (CCA) AG 98797-98884 GT AGG (GGG) AG 99132-99185 TG GAT -recovered pasa_asmbl_35550.p1, terminal, 99132, 99185 -recovered pasa_asmbl_35550.p1, internal, 91102, 91213 -recovered pasa_asmbl_35550.p1, internal, 91370, 91463 -recovered pasa_asmbl_35550.p1, internal, 92466, 92520 -recovered pasa_asmbl_35550.p1, internal, 95386, 95526 -recovered pasa_asmbl_35550.p1, internal, 96039, 96199 -recovered pasa_asmbl_35550.p1, internal, 96464, 96562 -recovered pasa_asmbl_35550.p1, internal, 97463, 97608 -recovered pasa_asmbl_35550.p1, internal, 97845, 98016 -recovered pasa_asmbl_35550.p1, internal, 98346, 98458 -recovered pasa_asmbl_35550.p1, internal, 98797, 98884 Valid prediction for snap_scaffold_26-snap.972-T1 Couldn't classify 183133, 183314 Sorry, prediction pasa_asmbl_35549.p1 fails validation. (GGA) TG 183133-183314 GT AGG (TCT) AG 183793-183928 GC AGG -recovered pasa_asmbl_35549.p1, terminal, 183793, 183928 -recovered pasa_asmbl_35549.p1, internal, 183793, 183928 Valid prediction for Augustus_model.g36778.t1 Valid prediction for GlimmerHMM_glimmerT_55507-T1 Valid prediction for snap_scaffold_26-snap.959-T1 Valid prediction for GlimmerHMM_glimmerT_55535-T1 Valid prediction for pasa_asmbl_35545.p1 Couldn't classify 32310, 32350 Couldn't classify 33937, 33981 Sorry, prediction pasa_asmbl_35554.p1 fails validation. (AAC) AG 32310-32350 GT AAG (TTT) AG 32448-32547 GT TGG (CTC) AG 32647-32763 GT AGG (AGA) AG 33577-33701 GT AGG (CCT) AG 33808-33856 GT AGG (GCC) AG 33937-33981 AC CCA -recovered pasa_asmbl_35554.p1, terminal, 32310, 32350 -recovered pasa_asmbl_35554.p1, internal, 32310, 32350 -recovered pasa_asmbl_35554.p1, internal, 32448, 32547 -recovered pasa_asmbl_35554.p1, internal, 32647, 32763 -recovered pasa_asmbl_35554.p1, internal, 33577, 33701 -recovered pasa_asmbl_35554.p1, internal, 33808, 33856 Couldn't classify 217490, 217640 Sorry, prediction pasa_asmbl_35540.p1 fails validation. (TTC) CG 217490-217640 GT CGG (GTC) AG 217914-218085 GT ACG (CAT) AG 218401-218519 GT GGG (AAA) AG 218721-218835 GT AAG (GGA) AG 219002-219101 GT ACG (AGG) AG 219210-219329 GT AGG (GAT) AG 219423-219599 GT GGG (ACC) AG 219688-219798 GT AGG (GGT) AG 219937-220074 GT AGG (CGC) AG 220372-220437 GT AGG (CTG) AG 220587-220645 GT AAG (GAT) AG 220896-221078 GT AAG (GAA) AG 221364-221475 GT AGG (TTT) AG 221631-221723 GT AGG (GAC) AG 222072-222263 CT AAC -recovered pasa_asmbl_35540.p1, terminal, 222072, 222263 -recovered pasa_asmbl_35540.p1, internal, 217914, 218085 -recovered pasa_asmbl_35540.p1, internal, 218401, 218519 -recovered pasa_asmbl_35540.p1, internal, 218721, 218835 -recovered pasa_asmbl_35540.p1, internal, 219002, 219101 -recovered pasa_asmbl_35540.p1, internal, 219210, 219329 -recovered pasa_asmbl_35540.p1, internal, 219423, 219599 -recovered pasa_asmbl_35540.p1, internal, 219688, 219798 -recovered pasa_asmbl_35540.p1, internal, 219937, 220074 -recovered pasa_asmbl_35540.p1, internal, 220372, 220437 -recovered pasa_asmbl_35540.p1, internal, 220587, 220645 -recovered pasa_asmbl_35540.p1, internal, 220896, 221078 -recovered pasa_asmbl_35540.p1, internal, 221364, 221475 -recovered pasa_asmbl_35540.p1, internal, 221631, 221723 Valid prediction for GlimmerHMM_glimmerT_55509-T1 Valid prediction for snap_scaffold_26-snap.955-T1 Valid prediction for snap_scaffold_26-snap.953-T1 Valid prediction for GlimmerHMM_glimmerT_55501-T1 Valid prediction for Augustus_model.g36764.t1 Valid prediction for GlimmerHMM_glimmerT_55521-T1 Valid prediction for Augustus_model.g36788.t1 Valid prediction for Augustus_model.g36765.t1 Valid prediction for GlimmerHMM_glimmerT_55503-T1 Valid prediction for Augustus_model.g36786.t1 Couldn't classify 216227, 216301 Couldn't classify 217080, 217239 Sorry, prediction pasa_asmbl_35541.p1 fails validation. (CTC) AC 216227-216301 GT AGG (TGC) AG 216415-216535 GT GGG (GAA) AG 216783-216960 GT GGG (TCT) AG 217080-217239 GT CAG -recovered pasa_asmbl_35541.p1, internal, 216415, 216535 -recovered pasa_asmbl_35541.p1, internal, 216783, 216960 -recovered pasa_asmbl_35541.p1, internal, 217080, 217239 Valid prediction for snap_scaffold_26-snap.932-T1 Valid prediction for snap_scaffold_26-snap.944-T1 Valid prediction for GlimmerHMM_glimmerT_55499-T1 -loading the search evidence (protein and EST search results, strand: -) -scoring exons (strand: -)Error with prediction: snap lend_intergenic: 26452, rend_intergenic: 17667 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 39120, rend_intergenic: 34509 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 43653, rend_intergenic: 42088 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 59166, rend_intergenic: 52160 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 81056, rend_intergenic: 72865 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 152977, rend_intergenic: 147580 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 172601, rend_intergenic: 165183 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 186290, rend_intergenic: 183247 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 196819, rend_intergenic: 189314 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 202015, rend_intergenic: 200757 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 214898, rend_intergenic: 202843 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 219785, rend_intergenic: 215434 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. -building DP trellis -building trellis in range 1 - 226015 -exon list size: 877 building trellis 0.1 0.2 0.3 0.5 0.6 0.7 0.8 0.9 1.0 1.1 1.3 1.4 1.5 1.6 1.7 1.8 1.9 2.0 2.2 2.3 2.4 2.5 2.6 2.7 2.8 3.0 3.1 3.2 3.3 3.4 3.5 3.6 3.8 3.9 4.0 4.1 4.2 4.3 4.4 4.6 4.7 4.8 4.9 5.0 5.1 5.2 5.3 5.5 5.6 5.7 5.8 5.9 6.0 6.1 6.3 6.4 6.5 6.6 6.7 6.8 6.9 7.1 7.2 7.3 7.4 7.5 7.6 7.7 7.8 8.0 8.1 8.2 8.3 8.4 8.5 8.6 8.8 8.9 9.0 9.1 9.2 9.3 9.4 9.6 9.7 9.8 9.9 10.0 10.1 10.2 10.4 10.5 10.6 10.7 10.8 10.9 11.0 11.1 11.3 11.4 11.5 11.6 11.7 11.8 11.9 12.1 12.2 12.3 12.4 12.5 12.6 12.7 12.9 13.0 13.1 13.2 13.3 13.4 13.5 13.7 13.8 13.9 14.0 14.1 14.2 14.3 14.4 14.6 14.7 14.8 14.9 15.0 15.1 15.2 15.4 15.5 15.6 15.7 15.8 15.9 16.0 16.2 16.3 16.4 16.5 16.6 16.7 16.8 17.0 17.1 17.2 17.3 17.4 17.5 17.6 17.7 17.9 18.0 18.1 18.2 18.3 18.4 18.5 18.7 18.8 18.9 19.0 19.1 19.2 19.3 19.5 19.6 19.7 19.8 19.9 20.0 20.1 20.3 20.4 20.5 20.6 20.7 20.8 20.9 21.0 21.2 21.3 21.4 21.5 21.6 21.7 21.8 22.0 22.1 22.2 22.3 22.4 22.5 22.6 22.8 22.9 23.0 23.1 23.2 23.3 23.4 23.5 23.7 23.8 23.9 24.0 24.1 24.2 24.3 24.5 24.6 24.7 24.8 24.9 25.0 25.1 25.3 25.4 25.5 25.6 25.7 25.8 25.9 26.1 26.2 26.3 26.4 26.5 26.6 26.7 26.8 27.0 27.1 27.2 27.3 27.4 27.5 27.6 27.8 27.9 28.0 28.1 28.2 28.3 28.4 28.6 28.7 28.8 28.9 29.0 29.1 29.2 29.4 29.5 29.6 29.7 29.8 29.9 30.0 30.1 30.3 30.4 30.5 30.6 30.7 30.8 30.9 31.1 31.2 31.3 31.4 31.5 31.6 31.7 31.9 32.0 32.1 32.2 32.3 32.4 32.5 32.7 32.8 32.9 33.0 33.1 33.2 33.3 33.4 33.6 33.7 33.8 33.9 34.0 34.1 34.2 34.4 34.5 34.6 34.7 34.8 34.9 35.0 35.2 35.3 35.4 35.5 35.6 35.7 35.8 35.9 36.1 36.2 36.3 36.4 36.5 36.6 36.7 36.9 37.0 37.1 37.2 37.3 37.4 37.5 37.7 37.8 37.9 38.0 38.1 38.2 38.3 38.5 38.6 38.7 38.8 38.9 39.0 39.1 39.2 39.4 39.5 39.6 39.7 39.8 39.9 40.0 40.2 40.3 40.4 40.5 40.6 40.7 40.8 41.0 41.1 41.2 41.3 41.4 41.5 41.6 41.8 41.9 42.0 42.1 42.2 42.3 42.4 42.5 42.7 42.8 42.9 43.0 43.1 43.2 43.3 43.5 43.6 43.7 43.8 43.9 44.0 44.1 44.3 44.4 44.5 44.6 44.7 44.8 44.9 45.1 45.2 45.3 45.4 45.5 45.6 45.7 45.8 46.0 46.1 46.2 46.3 46.4 46.5 46.6 46.8 46.9 47.0 47.1 47.2 47.3 47.4 47.6 47.7 47.8 47.9 48.0 48.1 48.2 48.4 48.5 48.6 48.7 48.8 48.9 49.0 49.1 49.3 49.4 49.5 49.6 49.7 49.8 49.9 50.1 50.2 50.3 50.4 50.5 50.6 50.7 50.9 51.0 51.1 51.2 51.3 51.4 51.5 51.6 51.8 51.9 52.0 52.1 52.2 52.3 52.4 52.6 52.7 52.8 52.9 53.0 53.1 53.2 53.4 53.5 53.6 53.7 53.8 53.9 54.0 54.2 54.3 54.4 54.5 54.6 54.7 54.8 54.9 55.1 55.2 55.3 55.4 55.5 55.6 55.7 55.9 56.0 56.1 56.2 56.3 56.4 56.5 56.7 56.8 56.9 57.0 57.1 57.2 57.3 57.5 57.6 57.7 57.8 57.9 58.0 58.1 58.2 58.4 58.5 58.6 58.7 58.8 58.9 59.0 59.2 59.3 59.4 59.5 59.6 59.7 59.8 60.0 60.1 60.2 60.3 60.4 60.5 60.6 60.8 60.9 61.0 61.1 61.2 61.3 61.4 61.5 61.7 61.8 61.9 62.0 62.1 62.2 62.3 62.5 62.6 62.7 62.8 62.9 63.0 63.1 63.3 63.4 63.5 63.6 63.7 63.8 63.9 64.1 64.2 64.3 64.4 64.5 64.6 64.7 64.8 65.0 65.1 65.2 65.3 65.4 65.5 65.6 65.8 65.9 66.0 66.1 66.2 66.3 66.4 66.6 66.7 66.8 66.9 67.0 67.1 67.2 67.3 67.5 67.6 67.7 67.8 67.9 68.0 68.1 68.3 68.4 68.5 68.6 68.7 68.8 68.9 69.1 69.2 69.3 69.4 69.5 69.6 69.7 69.9 70.0 70.1 70.2 70.3 70.4 70.5 70.6 70.8 70.9 71.0 71.1 71.2 71.3 71.4 71.6 71.7 71.8 71.9 72.0 72.1 72.2 72.4 72.5 72.6 72.7 72.8 72.9 73.0 73.2 73.3 73.4 73.5 73.6 73.7 73.8 73.9 74.1 74.2 74.3 74.4 74.5 74.6 74.7 74.9 75.0 75.1 75.2 75.3 75.4 75.5 75.7 75.8 75.9 76.0 76.1 76.2 76.3 76.5 76.6 76.7 76.8 76.9 77.0 77.1 77.2 77.4 77.5 77.6 77.7 77.8 77.9 78.0 78.2 78.3 78.4 78.5 78.6 78.7 78.8 79.0 79.1 79.2 79.3 79.4 79.5 79.6 79.7 79.9 80.0 80.1 80.2 80.3 80.4 80.5 80.7 80.8 80.9 81.0 81.1 81.2 81.3 81.5 81.6 81.7 81.8 81.9 82.0 82.1 82.3 82.4 82.5 82.6 82.7 82.8 82.9 83.0 83.2 83.3 83.4 83.5 83.6 83.7 83.8 84.0 84.1 84.2 84.3 84.4 84.5 84.6 84.8 84.9 85.0 85.1 85.2 85.3 85.4 85.6 85.7 85.8 85.9 86.0 86.1 86.2 86.3 86.5 86.6 86.7 86.8 86.9 87.0 87.1 87.3 87.4 87.5 87.6 87.7 87.8 87.9 88.1 88.2 88.3 88.4 88.5 88.6 88.7 88.9 89.0 89.1 89.2 89.3 89.4 89.5 89.6 89.8 89.9 90.0 90.1 90.2 90.3 90.4 90.6 90.7 90.8 90.9 91.0 91.1 91.2 91.4 91.5 91.6 91.7 91.8 91.9 92.0 92.2 92.3 92.4 92.5 92.6 92.7 92.8 92.9 93.1 93.2 93.3 93.4 93.5 93.6 93.7 93.9 94.0 94.1 94.2 94.3 94.4 94.5 94.7 94.8 94.9 95.0 95.1 95.2 95.3 95.4 95.6 95.7 95.8 95.9 96.0 96.1 96.2 96.4 96.5 96.6 96.7 96.8 96.9 97.0 97.2 97.3 97.4 97.5 97.6 97.7 97.8 98.0 98.1 98.2 98.3 98.4 98.5 98.6 98.7 98.9 99.0 99.1 99.2 99.3 99.4 99.5 99.7 99.8 99.9 -found 35 predictions from path traversal Error with prediction: snap lend_intergenic: 26452, rend_intergenic: 17667 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 39120, rend_intergenic: 34509 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 43653, rend_intergenic: 42088 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 59166, rend_intergenic: 52160 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 81056, rend_intergenic: 72865 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 152977, rend_intergenic: 147580 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 172601, rend_intergenic: 165183 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 186290, rend_intergenic: 183247 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 196819, rend_intergenic: 189314 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 202015, rend_intergenic: 200757 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 214898, rend_intergenic: 202843 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 219785, rend_intergenic: 215434 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. -reporting highest scoring path thru the trellis. -found 33 predictions persist after filtering for low support