-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_26/scaffold_26_2493384-2706163

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_26-snap.532-T1
Valid prediction for Augustus_model.g36581.t1
Valid prediction for snap_scaffold_26-snap.509-T1
Valid prediction for Augustus_model.g36576.t1
Valid prediction for GlimmerHMM_glimmerT_55217-T1
Valid prediction for Augustus_model.g36579.t1
Valid prediction for GlimmerHMM_glimmerT_55216-T1
Valid prediction for Augustus_model.g36577.t1
Valid prediction for Augustus_model.g36575.t1
Valid prediction for snap_scaffold_26-snap.537-T1
Valid prediction for snap_scaffold_26-snap.521-T1
Valid prediction for snap_scaffold_26-snap.533-T1
Valid prediction for GlimmerHMM_glimmerT_55236-T1
Valid prediction for snap_scaffold_26-snap.522-T1
Valid prediction for snap_scaffold_26-snap.504-T1
Valid prediction for GlimmerHMM_glimmerT_55222-T1
Valid prediction for snap_scaffold_26-snap.512-T1
Valid prediction for GlimmerHMM_glimmerT_55229-T1
Valid prediction for GlimmerHMM_glimmerT_55238-T1
Valid prediction for Augustus_model.g36582.t1
Valid prediction for GlimmerHMM_glimmerT_55228-T1
Valid prediction for GlimmerHMM_glimmerT_55226-T1
Valid prediction for GlimmerHMM_glimmerT_55237-T1
Valid prediction for GlimmerHMM_glimmerT_55233-T1
Valid prediction for GlimmerHMM_glimmerT_55239-T1
Valid prediction for GlimmerHMM_glimmerT_55235-T1
Valid prediction for snap_scaffold_26-snap.531-T1
Valid prediction for snap_scaffold_26-snap.525-T1
Valid prediction for Augustus_model.g36578.t1
Valid prediction for Augustus_model.g36580.t1
Valid prediction for snap_scaffold_26-snap.538-T1
Valid prediction for snap_scaffold_26-snap.518-T1
Valid prediction for snap_scaffold_26-snap.508-T1
Valid prediction for GlimmerHMM_glimmerT_55231-T1
Valid prediction for snap_scaffold_26-snap.528-T1
Valid prediction for GlimmerHMM_glimmerT_55232-T1
Valid prediction for GlimmerHMM_glimmerT_55221-T1
Valid prediction for snap_scaffold_26-snap.529-T1
Valid prediction for GlimmerHMM_glimmerT_55215-T1
Valid prediction for snap_scaffold_26-snap.506-T1
Valid prediction for GlimmerHMM_glimmerT_55225-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for Augustus_model.g36573.t1
Valid prediction for snap_scaffold_26-snap.511-T1
Valid prediction for snap_scaffold_26-snap.517-T1
Valid prediction for GlimmerHMM_glimmerT_55218-T1
Valid prediction for snap_scaffold_26-snap.534-T1
Valid prediction for snap_scaffold_26-snap.527-T1
Valid prediction for snap_scaffold_26-snap.515-T1
Valid prediction for snap_scaffold_26-snap.507-T1
Valid prediction for GlimmerHMM_glimmerT_55230-T1
Valid prediction for snap_scaffold_26-snap.520-T1
Valid prediction for snap_scaffold_26-snap.530-T1
Valid prediction for snap_scaffold_26-snap.505-T1
Valid prediction for Augustus_model.g36574.t1
Valid prediction for snap_scaffold_26-snap.514-T1
Valid prediction for snap_scaffold_26-snap.519-T1
Valid prediction for snap_scaffold_26-snap.526-T1
Valid prediction for snap_scaffold_26-snap.510-T1
Valid prediction for GlimmerHMM_glimmerT_55234-T1
Valid prediction for snap_scaffold_26-snap.535-T1
Valid prediction for GlimmerHMM_glimmerT_55219-T1
Valid prediction for GlimmerHMM_glimmerT_55220-T1
Valid prediction for snap_scaffold_26-snap.513-T1
Valid prediction for snap_scaffold_26-snap.523-T1
Valid prediction for GlimmerHMM_glimmerT_55223-T1
Valid prediction for GlimmerHMM_glimmerT_55224-T1
Valid prediction for snap_scaffold_26-snap.516-T1
Valid prediction for GlimmerHMM_glimmerT_55227-T1
Valid prediction for snap_scaffold_26-snap.524-T1
Valid prediction for snap_scaffold_26-snap.536-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 8901, rend_intergenic: 4833  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 14823, rend_intergenic: 9980  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 37040, rend_intergenic: 16311  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 51976, rend_intergenic: 39355  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 83625, rend_intergenic: 62712  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 97549, rend_intergenic: 84371  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 101800, rend_intergenic: 97940  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 130992, rend_intergenic: 106469  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 156230, rend_intergenic: 132283  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 169775, rend_intergenic: 156287  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 170656, rend_intergenic: 169835  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 185777, rend_intergenic: 170656  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 208118, rend_intergenic: 185985  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 212780
-exon list size: 286


building trellis

0.3    
0.7    
1.0    
1.4    
1.7    
2.1    
2.4    
2.8    
3.1    
3.5    
3.8    
4.2    
4.5    
4.9    
5.2    
5.6    
5.9    
6.2    
6.6    
6.9    
7.3    
7.6    
8.0    
8.3    
8.7    
9.0    
9.4    
9.7    
10.1    
10.4    
10.8    
11.1    
11.5    
11.8    
12.2    
12.5    
12.8    
13.2    
13.5    
13.9    
14.2    
14.6    
14.9    
15.3    
15.6    
16.0    
16.3    
16.7    
17.0    
17.4    
17.7    
18.1    
18.4    
18.8    
19.1    
19.4    
19.8    
20.1    
20.5    
20.8    
21.2    
21.5    
21.9    
22.2    
22.6    
22.9    
23.3    
23.6    
24.0    
24.3    
24.7    
25.0    
25.3    
25.7    
26.0    
26.4    
26.7    
27.1    
27.4    
27.8    
28.1    
28.5    
28.8    
29.2    
29.5    
29.9    
30.2    
30.6    
30.9    
31.2    
31.6    
31.9    
32.3    
32.6    
33.0    
33.3    
33.7    
34.0    
34.4    
34.7    
35.1    
35.4    
35.8    
36.1    
36.5    
36.8    
37.2    
37.5    
37.8    
38.2    
38.5    
38.9    
39.2    
39.6    
39.9    
40.3    
40.6    
41.0    
41.3    
41.7    
42.0    
42.4    
42.7    
43.1    
43.4    
43.8    
44.1    
44.4    
44.8    
45.1    
45.5    
45.8    
46.2    
46.5    
46.9    
47.2    
47.6    
47.9    
48.3    
48.6    
49.0    
49.3    
49.7    
50.0    
50.3    
50.7    
51.0    
51.4    
51.7    
52.1    
52.4    
52.8    
53.1    
53.5    
53.8    
54.2    
54.5    
54.9    
55.2    
55.6    
55.9    
56.2    
56.6    
56.9    
57.3    
57.6    
58.0    
58.3    
58.7    
59.0    
59.4    
59.7    
60.1    
60.4    
60.8    
61.1    
61.5    
61.8    
62.2    
62.5    
62.8    
63.2    
63.5    
63.9    
64.2    
64.6    
64.9    
65.3    
65.6    
66.0    
66.3    
66.7    
67.0    
67.4    
67.7    
68.1    
68.4    
68.8    
69.1    
69.4    
69.8    
70.1    
70.5    
70.8    
71.2    
71.5    
71.9    
72.2    
72.6    
72.9    
73.3    
73.6    
74.0    
74.3    
74.7    
75.0    
75.3    
75.7    
76.0    
76.4    
76.7    
77.1    
77.4    
77.8    
78.1    
78.5    
78.8    
79.2    
79.5    
79.9    
80.2    
80.6    
80.9    
81.2    
81.6    
81.9    
82.3    
82.6    
83.0    
83.3    
83.7    
84.0    
84.4    
84.7    
85.1    
85.4    
85.8    
86.1    
86.5    
86.8    
87.2    
87.5    
87.8    
88.2    
88.5    
88.9    
89.2    
89.6    
89.9    
90.3    
90.6    
91.0    
91.3    
91.7    
92.0    
92.4    
92.7    
93.1    
93.4    
93.8    
94.1    
94.4    
94.8    
95.1    
95.5    
95.8    
96.2    
96.5    
96.9    
97.2    
97.6    
97.9    
98.3    
98.6    
99.0    
99.3    
99.7    
-found 23 predictions from path traversal
Error with prediction: snap lend_intergenic: 8901, rend_intergenic: 4833  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 14823, rend_intergenic: 9980  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 37040, rend_intergenic: 16311  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 51976, rend_intergenic: 39355  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 83625, rend_intergenic: 62712  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 97549, rend_intergenic: 84371  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 101800, rend_intergenic: 97940  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 130992, rend_intergenic: 106469  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 156230, rend_intergenic: 132283  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 169775, rend_intergenic: 156287  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 170656, rend_intergenic: 169835  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 185777, rend_intergenic: 170656  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 208118, rend_intergenic: 185985  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 7 predictions persist after filtering for low support