-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_26/scaffold_26_2277924-2494948

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_26-snap.500-T1
Valid prediction for snap_scaffold_26-snap.503-T1
Valid prediction for GlimmerHMM_glimmerT_55201-T1
Valid prediction for snap_scaffold_26-snap.486-T1
Valid prediction for GlimmerHMM_glimmerT_55205-T1
Valid prediction for snap_scaffold_26-snap.494-T1
Valid prediction for snap_scaffold_26-snap.490-T1
Valid prediction for snap_scaffold_26-snap.468-T1
Valid prediction for GlimmerHMM_glimmerT_55214-T1
Valid prediction for Augustus_model.g36563.t1
Valid prediction for snap_scaffold_26-snap.488-T1
Valid prediction for GlimmerHMM_glimmerT_55202-T1
Valid prediction for Augustus_model.g36572.t1
Valid prediction for Augustus_model.g36569.t1
Valid prediction for snap_scaffold_26-snap.487-T1
Valid prediction for snap_scaffold_26-snap.495-T1
Valid prediction for snap_scaffold_26-snap.484-T1
Valid prediction for Augustus_model.g36567.t1
Valid prediction for snap_scaffold_26-snap.476-T1
Valid prediction for snap_scaffold_26-snap.467-T1
Valid prediction for Augustus_model.g36561.t1
Valid prediction for GlimmerHMM_glimmerT_55192-T1
Valid prediction for GlimmerHMM_glimmerT_55199-T1
Valid prediction for GlimmerHMM_glimmerT_55204-T1
Valid prediction for snap_scaffold_26-snap.481-T1
Valid prediction for GlimmerHMM_glimmerT_55196-T1
Valid prediction for GlimmerHMM_glimmerT_55191-T1
Valid prediction for snap_scaffold_26-snap.472-T1
Valid prediction for snap_scaffold_26-snap.482-T1
Valid prediction for snap_scaffold_26-snap.497-T1
Valid prediction for GlimmerHMM_glimmerT_55189-T1
Couldn't classify 3993, 4045
Couldn't classify 7499, 7606
Sorry, prediction pasa_asmbl_34748.p1 fails validation.
(AAC)	 TT	3993-4045	GT	AGG
(CTT)	 AG	4380-4512	GT	TGG
(TCC)	 AG	5274-5319	GT	TGG
(GTG)	 AG	6633-6817	GT	AGG
(TTG)	 AG	7499-7606	GG	CAG
-recovered pasa_asmbl_34748.p1, internal, 4380, 4512
-recovered pasa_asmbl_34748.p1, internal, 5274, 5319
-recovered pasa_asmbl_34748.p1, internal, 6633, 6817
Valid prediction for Augustus_model.g36562.t1
Valid prediction for GlimmerHMM_glimmerT_55207-T1
Valid prediction for GlimmerHMM_glimmerT_55197-T1
Valid prediction for GlimmerHMM_glimmerT_55213-T1
Valid prediction for Augustus_model.g36564.t1
Valid prediction for GlimmerHMM_glimmerT_55193-T1
Valid prediction for Augustus_model.g36566.t1
Valid prediction for snap_scaffold_26-snap.463-T1
Valid prediction for Augustus_model.g36565.t1
Valid prediction for snap_scaffold_26-snap.458-T1
Valid prediction for snap_scaffold_26-snap.465-T1
Valid prediction for snap_scaffold_26-snap.460-T1
Valid prediction for snap_scaffold_26-snap.466-T1
Valid prediction for GlimmerHMM_glimmerT_55211-T1
Valid prediction for GlimmerHMM_glimmerT_55200-T1
Valid prediction for snap_scaffold_26-snap.473-T1
Valid prediction for snap_scaffold_26-snap.462-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for Augustus_model.g36571.t1
Valid prediction for snap_scaffold_26-snap.461-T1
Valid prediction for GlimmerHMM_glimmerT_55210-T1
Valid prediction for snap_scaffold_26-snap.480-T1
Valid prediction for GlimmerHMM_glimmerT_55212-T1
Valid prediction for GlimmerHMM_glimmerT_55203-T1
Valid prediction for snap_scaffold_26-snap.477-T1
Valid prediction for snap_scaffold_26-snap.499-T1
Valid prediction for snap_scaffold_26-snap.489-T1
Valid prediction for snap_scaffold_26-snap.491-T1
Valid prediction for GlimmerHMM_glimmerT_55194-T1
Valid prediction for GlimmerHMM_glimmerT_55198-T1
Valid prediction for GlimmerHMM_glimmerT_55209-T1
Valid prediction for snap_scaffold_26-snap.475-T1
Valid prediction for snap_scaffold_26-snap.483-T1
Valid prediction for snap_scaffold_26-snap.479-T1
Valid prediction for snap_scaffold_26-snap.469-T1
Valid prediction for Augustus_model.g36568.t1
Valid prediction for snap_scaffold_26-snap.492-T1
Valid prediction for snap_scaffold_26-snap.498-T1
Valid prediction for snap_scaffold_26-snap.470-T1
Valid prediction for GlimmerHMM_glimmerT_55206-T1
Valid prediction for GlimmerHMM_glimmerT_55208-T1
Valid prediction for snap_scaffold_26-snap.496-T1
Valid prediction for snap_scaffold_26-snap.471-T1
Valid prediction for Augustus_model.g36570.t1
Valid prediction for snap_scaffold_26-snap.501-T1
Valid prediction for snap_scaffold_26-snap.474-T1
Valid prediction for snap_scaffold_26-snap.485-T1
Valid prediction for snap_scaffold_26-snap.502-T1
Valid prediction for GlimmerHMM_glimmerT_55190-T1
Valid prediction for snap_scaffold_26-snap.478-T1
Valid prediction for snap_scaffold_26-snap.459-T1
Valid prediction for GlimmerHMM_glimmerT_55195-T1
Valid prediction for snap_scaffold_26-snap.464-T1
Valid prediction for snap_scaffold_26-snap.493-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 9808, rend_intergenic: 3641  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 13815, rend_intergenic: 12116  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 18971, rend_intergenic: 16182  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 34598, rend_intergenic: 29605  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 55429, rend_intergenic: 48650  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 69367, rend_intergenic: 56240  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 77694, rend_intergenic: 70407  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 104308, rend_intergenic: 78758  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 116428, rend_intergenic: 104387  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 117401, rend_intergenic: 116457  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 124588, rend_intergenic: 117791  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 126879, rend_intergenic: 124620  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 142688, rend_intergenic: 130987  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 151218, rend_intergenic: 147311  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 168400, rend_intergenic: 151699  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 176653, rend_intergenic: 172259  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 179313, rend_intergenic: 176687  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 186592, rend_intergenic: 181955  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 195313, rend_intergenic: 186675  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 200966, rend_intergenic: 197062  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 211522, rend_intergenic: 202220  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 215460, rend_intergenic: 211782  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 217025
-exon list size: 323


building trellis

0.3    
0.6    
0.9    
1.2    
1.5    
1.8    
2.2    
2.5    
2.8    
3.1    
3.4    
3.7    
4.0    
4.3    
4.6    
4.9    
5.2    
5.5    
5.8    
6.2    
6.5    
6.8    
7.1    
7.4    
7.7    
8.0    
8.3    
8.6    
8.9    
9.2    
9.5    
9.8    
10.2    
10.5    
10.8    
11.1    
11.4    
11.7    
12.0    
12.3    
12.6    
12.9    
13.2    
13.5    
13.8    
14.2    
14.5    
14.8    
15.1    
15.4    
15.7    
16.0    
16.3    
16.6    
16.9    
17.2    
17.5    
17.8    
18.2    
18.5    
18.8    
19.1    
19.4    
19.7    
20.0    
20.3    
20.6    
20.9    
21.2    
21.5    
21.8    
22.2    
22.5    
22.8    
23.1    
23.4    
23.7    
24.0    
24.3    
24.6    
24.9    
25.2    
25.5    
25.8    
26.2    
26.5    
26.8    
27.1    
27.4    
27.7    
28.0    
28.3    
28.6    
28.9    
29.2    
29.5    
29.8    
30.2    
30.5    
30.8    
31.1    
31.4    
31.7    
32.0    
32.3    
32.6    
32.9    
33.2    
33.5    
33.8    
34.2    
34.5    
34.8    
35.1    
35.4    
35.7    
36.0    
36.3    
36.6    
36.9    
37.2    
37.5    
37.8    
38.2    
38.5    
38.8    
39.1    
39.4    
39.7    
40.0    
40.3    
40.6    
40.9    
41.2    
41.5    
41.8    
42.2    
42.5    
42.8    
43.1    
43.4    
43.7    
44.0    
44.3    
44.6    
44.9    
45.2    
45.5    
45.8    
46.2    
46.5    
46.8    
47.1    
47.4    
47.7    
48.0    
48.3    
48.6    
48.9    
49.2    
49.5    
49.8    
50.2    
50.5    
50.8    
51.1    
51.4    
51.7    
52.0    
52.3    
52.6    
52.9    
53.2    
53.5    
53.8    
54.2    
54.5    
54.8    
55.1    
55.4    
55.7    
56.0    
56.3    
56.6    
56.9    
57.2    
57.5    
57.8    
58.2    
58.5    
58.8    
59.1    
59.4    
59.7    
60.0    
60.3    
60.6    
60.9    
61.2    
61.5    
61.8    
62.2    
62.5    
62.8    
63.1    
63.4    
63.7    
64.0    
64.3    
64.6    
64.9    
65.2    
65.5    
65.8    
66.2    
66.5    
66.8    
67.1    
67.4    
67.7    
68.0    
68.3    
68.6    
68.9    
69.2    
69.5    
69.8    
70.2    
70.5    
70.8    
71.1    
71.4    
71.7    
72.0    
72.3    
72.6    
72.9    
73.2    
73.5    
73.8    
74.2    
74.5    
74.8    
75.1    
75.4    
75.7    
76.0    
76.3    
76.6    
76.9    
77.2    
77.5    
77.8    
78.2    
78.5    
78.8    
79.1    
79.4    
79.7    
80.0    
80.3    
80.6    
80.9    
81.2    
81.5    
81.8    
82.2    
82.5    
82.8    
83.1    
83.4    
83.7    
84.0    
84.3    
84.6    
84.9    
85.2    
85.5    
85.8    
86.2    
86.5    
86.8    
87.1    
87.4    
87.7    
88.0    
88.3    
88.6    
88.9    
89.2    
89.5    
89.8    
90.2    
90.5    
90.8    
91.1    
91.4    
91.7    
92.0    
92.3    
92.6    
92.9    
93.2    
93.5    
93.8    
94.2    
94.5    
94.8    
95.1    
95.4    
95.7    
96.0    
96.3    
96.6    
96.9    
97.2    
97.5    
97.8    
98.2    
98.5    
98.8    
99.1    
99.4    
99.7    
-found 31 predictions from path traversal
Error with prediction: snap lend_intergenic: 9808, rend_intergenic: 3641  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 13815, rend_intergenic: 12116  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 18971, rend_intergenic: 16182  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 34598, rend_intergenic: 29605  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 55429, rend_intergenic: 48650  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 69367, rend_intergenic: 56240  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 77694, rend_intergenic: 70407  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 104308, rend_intergenic: 78758  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 116428, rend_intergenic: 104387  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 117401, rend_intergenic: 116457  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 124588, rend_intergenic: 117791  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 126879, rend_intergenic: 124620  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 142688, rend_intergenic: 130987  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 151218, rend_intergenic: 147311  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 168400, rend_intergenic: 151699  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 176653, rend_intergenic: 172259  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 179313, rend_intergenic: 176687  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 186592, rend_intergenic: 181955  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 195313, rend_intergenic: 186675  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 200966, rend_intergenic: 197062  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 211522, rend_intergenic: 202220  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 215460, rend_intergenic: 211782  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 14 predictions persist after filtering for low support