-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_26/scaffold_26_1867058-2057774

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_26-snap.404-T1
Valid prediction for GlimmerHMM_glimmerT_55151-T1
Valid prediction for snap_scaffold_26-snap.366-T1
Valid prediction for snap_scaffold_26-snap.394-T1
Valid prediction for snap_scaffold_26-snap.395-T1
Valid prediction for GlimmerHMM_glimmerT_55149-T1
Valid prediction for snap_scaffold_26-snap.381-T1
Valid prediction for Augustus_model.g36538.t1
Valid prediction for GlimmerHMM_glimmerT_55144-T1
Valid prediction for snap_scaffold_26-snap.405-T1
Valid prediction for snap_scaffold_26-snap.368-T1
Valid prediction for Augustus_model.g36545.t1
Valid prediction for snap_scaffold_26-snap.374-T1
Valid prediction for snap_scaffold_26-snap.371-T1
Valid prediction for snap_scaffold_26-snap.383-T1
Valid prediction for GlimmerHMM_glimmerT_55143-T1
Valid prediction for snap_scaffold_26-snap.401-T1
Valid prediction for snap_scaffold_26-snap.398-T1
Valid prediction for snap_scaffold_26-snap.376-T1
Valid prediction for snap_scaffold_26-snap.403-T1
Valid prediction for GlimmerHMM_glimmerT_55146-T1
Valid prediction for snap_scaffold_26-snap.382-T1
Valid prediction for snap_scaffold_26-snap.378-T1
Valid prediction for snap_scaffold_26-snap.390-T1
Valid prediction for GlimmerHMM_glimmerT_55153-T1
Valid prediction for GlimmerHMM_glimmerT_55139-T1
Valid prediction for snap_scaffold_26-snap.386-T1
Valid prediction for snap_scaffold_26-snap.377-T1
Valid prediction for snap_scaffold_26-snap.402-T1
Sorry, intron length (7) is less than minimum required (10)
Sorry, intron length (4) is less than minimum required (10)
Valid prediction for snap_scaffold_26-snap.392-T1
Couldn't classify 130360, 130546
Sorry, prediction pasa_asmbl_34729.p1 fails validation.
(ATG)	 TC	125397-125454	GT	AGG
(GTC)	 AG	126109-126162	GT	TGG
(TAA)	 AG	126405-126512	GT	CGG
(ACT)	 AG	126764-126823	GT	AGG
(ATA)	 AG	126933-126954	GT	GGG
(GAT)	 AG	127520-127566	GT	GGG
(ACC)	 AG	128391-128475	GT	AGG
(GAT)	 AG	130360-130546	GG	CAG
-recovered pasa_asmbl_34729.p1, initial, 125397, 125454
-recovered pasa_asmbl_34729.p1, terminal, 126764, 126823
-recovered pasa_asmbl_34729.p1, internal, 126109, 126162
-recovered pasa_asmbl_34729.p1, internal, 126405, 126512
-recovered pasa_asmbl_34729.p1, internal, 126764, 126823
-recovered pasa_asmbl_34729.p1, internal, 126933, 126954
-recovered pasa_asmbl_34729.p1, internal, 127520, 127566
-recovered pasa_asmbl_34729.p1, internal, 128391, 128475
Valid prediction for snap_scaffold_26-snap.388-T1
Valid prediction for Augustus_model.g36537.t1
Couldn't classify 132453, 132576
Sorry, prediction pasa_asmbl_34730.p1 fails validation.
(TGG)	 GC	132453-132576	GT	GGG
(AGT)	 AG	133593-133699	GT	CTG
(GCA)	 AG	133859-134095	GT	GGG
(TTG)	 AG	134223-134274	GT	AGG
(GAA)	 AG	134567-134638	GT	TGG
(TGA)	 AG	134918-135021	GT	AGG
(CCC)	 AG	135487-135552	GT	AGG
(GCT)	 AG	136189-136258	GT	AGG
(GGT)	 AG	137237-137343	GT	AGG
(GTG)	 AG	137478-137564	GT	AGG
(GTT)	 AG	137918-138004	GT	AGG
(ACA)	 AG	138108-138246	GT	GAG
(CTA)	 AG	138470-138597	GT	AGG
(GCG)	 AG	139098-139187	GC	GAG
-recovered pasa_asmbl_34730.p1, terminal, 139098, 139187
-recovered pasa_asmbl_34730.p1, internal, 133593, 133699
-recovered pasa_asmbl_34730.p1, internal, 133859, 134095
-recovered pasa_asmbl_34730.p1, internal, 134223, 134274
-recovered pasa_asmbl_34730.p1, internal, 134567, 134638
-recovered pasa_asmbl_34730.p1, internal, 134918, 135021
-recovered pasa_asmbl_34730.p1, internal, 135487, 135552
-recovered pasa_asmbl_34730.p1, internal, 136189, 136258
-recovered pasa_asmbl_34730.p1, internal, 137237, 137343
-recovered pasa_asmbl_34730.p1, internal, 137478, 137564
-recovered pasa_asmbl_34730.p1, internal, 137918, 138004
-recovered pasa_asmbl_34730.p1, internal, 138108, 138246
-recovered pasa_asmbl_34730.p1, internal, 138470, 138597
-recovered pasa_asmbl_34730.p1, internal, 139098, 139187
Valid prediction for snap_scaffold_26-snap.387-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_26-snap.369-T1
Valid prediction for Augustus_model.g36543.t1
Valid prediction for GlimmerHMM_glimmerT_55135-T1
Valid prediction for snap_scaffold_26-snap.391-T1
Valid prediction for GlimmerHMM_glimmerT_55140-T1
Couldn't classify 80104, 80748
Sorry, prediction pasa_asmbl_35432.p1 fails validation.
(TCG)	 AT	80104-80748	GG	AGG
Valid prediction for snap_scaffold_26-snap.367-T1
Valid prediction for GlimmerHMM_glimmerT_55145-T1
Valid prediction for snap_scaffold_26-snap.396-T1
Valid prediction for Augustus_model.g36540.t1
Valid prediction for GlimmerHMM_glimmerT_55148-T1
Valid prediction for GlimmerHMM_glimmerT_55141-T1
Valid prediction for Augustus_model.g36534.t1
Valid prediction for GlimmerHMM_glimmerT_55137-T1
Sorry, intron length (7) is less than minimum required (10)
Valid prediction for snap_scaffold_26-snap.393-T1
Valid prediction for snap_scaffold_26-snap.389-T1
Valid prediction for GlimmerHMM_glimmerT_55154-T1
Couldn't classify 116307, 116720
Sorry, prediction pasa_asmbl_35424.p1 fails validation.
(ATG)	 AG	116307-116720	CT	GGC
Valid prediction for snap_scaffold_26-snap.397-T1
Couldn't classify 160063, 160188
Couldn't classify 160859, 160900
Sorry, prediction pasa_asmbl_35911.p1 fails validation.
(GCC)	 TC	160063-160188	GT	ACG
(GCG)	 AG	160428-160559	GT	TGG
(AAA)	 AG	160859-160900	AC	TCA
-recovered pasa_asmbl_35911.p1, internal, 160428, 160559
Valid prediction for snap_scaffold_26-snap.370-T1
Valid prediction for GlimmerHMM_glimmerT_55147-T1
Valid prediction for snap_scaffold_26-snap.384-T1
Valid prediction for snap_scaffold_26-snap.380-T1
Valid prediction for GlimmerHMM_glimmerT_55152-T1
Valid prediction for GlimmerHMM_glimmerT_55138-T1
Valid prediction for snap_scaffold_26-snap.406-T1
Valid prediction for snap_scaffold_26-snap.400-T1
Sorry, intron length (8) is less than minimum required (10)
Valid prediction for snap_scaffold_26-snap.385-T1
Couldn't classify 95371, 95961
Sorry, prediction pasa_asmbl_35430.p1 fails validation.
(GAG)	 AA	95371-95961	AC	ACA
Valid prediction for Augustus_model.g36536.t1
Valid prediction for GlimmerHMM_glimmerT_55134-T1
Couldn't classify 166239, 166430
Sorry, prediction pasa_asmbl_35417.p1 fails validation.
(GCA)	 AG	166239-166430	GT	TCG
(TTC)	 AG	167050-167124	GT	GAG
(ATC)	 AG	167510-167605	GT	AGG
(TTG)	 AG	167980-168129	GT	AGG
(GGC)	 AG	168421-168504	GT	AGG
(TTC)	 AG	168863-168940	CC	GAC
-recovered pasa_asmbl_35417.p1, terminal, 168863, 168940
-recovered pasa_asmbl_35417.p1, internal, 166239, 166430
-recovered pasa_asmbl_35417.p1, internal, 167050, 167124
-recovered pasa_asmbl_35417.p1, internal, 167510, 167605
-recovered pasa_asmbl_35417.p1, internal, 167980, 168129
-recovered pasa_asmbl_35417.p1, internal, 168421, 168504
Valid prediction for snap_scaffold_26-snap.373-T1
Valid prediction for Augustus_model.g36541.t1
Valid prediction for snap_scaffold_26-snap.372-T1
Valid prediction for snap_scaffold_26-snap.399-T1
Valid prediction for Augustus_model.g36542.t1
Valid prediction for Augustus_model.g36539.t1
Valid prediction for Augustus_model.g36535.t1
Valid prediction for GlimmerHMM_glimmerT_55136-T1
Valid prediction for snap_scaffold_26-snap.379-T1
Couldn't classify 38513, 38754
Couldn't classify 46922, 47094
Sorry, prediction pasa_asmbl_35435.p1 fails validation.
(TGT)	 TG	38513-38754	GT	AGG
(GTC)	 AG	39078-39195	GT	AGG
(ATC)	 AG	41592-41678	GT	AGG
(GCC)	 AG	41920-42041	GT	GGG
(CCT)	 AG	42430-42577	GT	TGG
(CTG)	 AG	42850-42910	GT	CTG
(ACC)	 AG	43047-43174	GT	AGG
(TTT)	 AG	44061-44138	GT	TGG
(ACG)	 AG	44803-44894	GT	AGG
(GAA)	 AG	46153-46205	GT	TGG
(CCT)	 AG	46922-47094	AC	CCA
-recovered pasa_asmbl_35435.p1, internal, 39078, 39195
-recovered pasa_asmbl_35435.p1, internal, 41592, 41678
-recovered pasa_asmbl_35435.p1, internal, 41920, 42041
-recovered pasa_asmbl_35435.p1, internal, 42430, 42577
-recovered pasa_asmbl_35435.p1, internal, 42850, 42910
-recovered pasa_asmbl_35435.p1, internal, 43047, 43174
-recovered pasa_asmbl_35435.p1, internal, 44061, 44138
-recovered pasa_asmbl_35435.p1, internal, 44803, 44894
-recovered pasa_asmbl_35435.p1, internal, 46153, 46205
Valid prediction for Augustus_model.g36544.t1
Valid prediction for GlimmerHMM_glimmerT_55142-T1
Valid prediction for snap_scaffold_26-snap.375-T1
Sorry, intron length (7) is less than minimum required (10)
Valid prediction for Augustus_model.g36546.t1
Valid prediction for GlimmerHMM_glimmerT_55150-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 4890, rend_intergenic: 3666  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 6779, rend_intergenic: 4892  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 13324, rend_intergenic: 7121  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 16919, rend_intergenic: 15961  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 20340, rend_intergenic: 18001  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 23037, rend_intergenic: 21778  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 37781, rend_intergenic: 23168  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 58121, rend_intergenic: 46571  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 82519, rend_intergenic: 78665  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 106458, rend_intergenic: 92888  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 119257, rend_intergenic: 115822  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 122599, rend_intergenic: 119649  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 139187, rend_intergenic: 128387  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 149637, rend_intergenic: 142650  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 177159, rend_intergenic: 150313  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: GlimmerHMM lend_intergenic: 159681, rend_intergenic: 159678  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 190717
-exon list size: 389


building trellis

0.3    
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0.8    
1.0    
1.3    
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7.4    
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7.9    
8.2    
8.4    
8.7    
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9.2    
9.5    
9.7    
10.0    
10.2    
10.5    
10.7    
11.0    
11.3    
11.5    
11.8    
12.0    
12.3    
12.5    
12.8    
13.0    
13.3    
13.6    
13.8    
14.1    
14.3    
14.6    
14.8    
15.1    
15.3    
15.6    
15.9    
16.1    
16.4    
16.6    
16.9    
17.1    
17.4    
17.6    
17.9    
18.2    
18.4    
18.7    
18.9    
19.2    
19.4    
19.7    
19.9    
20.2    
20.5    
20.7    
21.0    
21.2    
21.5    
21.7    
22.0    
22.3    
22.5    
22.8    
23.0    
23.3    
23.5    
23.8    
24.0    
24.3    
24.6    
24.8    
25.1    
25.3    
25.6    
25.8    
26.1    
26.3    
26.6    
26.9    
27.1    
27.4    
27.6    
27.9    
28.1    
28.4    
28.6    
28.9    
29.2    
29.4    
29.7    
29.9    
30.2    
30.4    
30.7    
30.9    
31.2    
31.5    
31.7    
32.0    
32.2    
32.5    
32.7    
33.0    
33.2    
33.5    
33.8    
34.0    
34.3    
34.5    
34.8    
35.0    
35.3    
35.5    
35.8    
36.1    
36.3    
36.6    
36.8    
37.1    
37.3    
37.6    
37.9    
38.1    
38.4    
38.6    
38.9    
39.1    
39.4    
39.6    
39.9    
40.2    
40.4    
40.7    
40.9    
41.2    
41.4    
41.7    
41.9    
42.2    
42.5    
42.7    
43.0    
43.2    
43.5    
43.7    
44.0    
44.2    
44.5    
44.8    
45.0    
45.3    
45.5    
45.8    
46.0    
46.3    
46.5    
46.8    
47.1    
47.3    
47.6    
47.8    
48.1    
48.3    
48.6    
48.8    
49.1    
49.4    
49.6    
49.9    
50.1    
50.4    
50.6    
50.9    
51.2    
51.4    
51.7    
51.9    
52.2    
52.4    
52.7    
52.9    
53.2    
53.5    
53.7    
54.0    
54.2    
54.5    
54.7    
55.0    
55.2    
55.5    
55.8    
56.0    
56.3    
56.5    
56.8    
57.0    
57.3    
57.5    
57.8    
58.1    
58.3    
58.6    
58.8    
59.1    
59.3    
59.6    
59.8    
60.1    
60.4    
60.6    
60.9    
61.1    
61.4    
61.6    
61.9    
62.1    
62.4    
62.7    
62.9    
63.2    
63.4    
63.7    
63.9    
64.2    
64.5    
64.7    
65.0    
65.2    
65.5    
65.7    
66.0    
66.2    
66.5    
66.8    
67.0    
67.3    
67.5    
67.8    
68.0    
68.3    
68.5    
68.8    
69.1    
69.3    
69.6    
69.8    
70.1    
70.3    
70.6    
70.8    
71.1    
71.4    
71.6    
71.9    
72.1    
72.4    
72.6    
72.9    
73.1    
73.4    
73.7    
73.9    
74.2    
74.4    
74.7    
74.9    
75.2    
75.4    
75.7    
76.0    
76.2    
76.5    
76.7    
77.0    
77.2    
77.5    
77.7    
78.0    
78.3    
78.5    
78.8    
79.0    
79.3    
79.5    
79.8    
80.1    
80.3    
80.6    
80.8    
81.1    
81.3    
81.6    
81.8    
82.1    
82.4    
82.6    
82.9    
83.1    
83.4    
83.6    
83.9    
84.1    
84.4    
84.7    
84.9    
85.2    
85.4    
85.7    
85.9    
86.2    
86.4    
86.7    
87.0    
87.2    
87.5    
87.7    
88.0    
88.2    
88.5    
88.7    
89.0    
89.3    
89.5    
89.8    
90.0    
90.3    
90.5    
90.8    
91.0    
91.3    
91.6    
91.8    
92.1    
92.3    
92.6    
92.8    
93.1    
93.4    
93.6    
93.9    
94.1    
94.4    
94.6    
94.9    
95.1    
95.4    
95.7    
95.9    
96.2    
96.4    
96.7    
96.9    
97.2    
97.4    
97.7    
98.0    
98.2    
98.5    
98.7    
99.0    
99.2    
99.5    
99.7    
-found 23 predictions from path traversal
Error with prediction: snap lend_intergenic: 4890, rend_intergenic: 3666  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 6779, rend_intergenic: 4892  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 13324, rend_intergenic: 7121  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 16919, rend_intergenic: 15961  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 20340, rend_intergenic: 18001  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 23037, rend_intergenic: 21778  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 37781, rend_intergenic: 23168  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 58121, rend_intergenic: 46571  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 82519, rend_intergenic: 78665  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 106458, rend_intergenic: 92888  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 119257, rend_intergenic: 115822  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 122599, rend_intergenic: 119649  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 139187, rend_intergenic: 128387  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 149637, rend_intergenic: 142650  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 177159, rend_intergenic: 150313  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: GlimmerHMM lend_intergenic: 159681, rend_intergenic: 159678  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 14 predictions persist after filtering for low support