-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_26/scaffold_26_1164830-1385566

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for Augustus_model.g36510.t1
Valid prediction for snap_scaffold_26-snap.277-T1
Valid prediction for snap_scaffold_26-snap.274-T1
Valid prediction for GlimmerHMM_glimmerT_55059-T1
Valid prediction for snap_scaffold_26-snap.257-T1
Valid prediction for Augustus_model.g36512.t1
Valid prediction for snap_scaffold_26-snap.280-T1
Valid prediction for GlimmerHMM_glimmerT_55066-T1
Valid prediction for GlimmerHMM_glimmerT_55067-T1
Valid prediction for GlimmerHMM_glimmerT_55075-T1
Valid prediction for snap_scaffold_26-snap.258-T1
Couldn't classify 189904, 189935
Couldn't classify 190828, 191008
Sorry, prediction pasa_asmbl_34715.p1 fails validation.
(GCC)	 AA	189904-189935	GT	TGG
(GTA)	 AG	190266-190499	GT	AGG
(CTC)	 AG	190828-191008	AT	AGA
-recovered pasa_asmbl_34715.p1, internal, 190266, 190499
Valid prediction for GlimmerHMM_glimmerT_55065-T1
Valid prediction for snap_scaffold_26-snap.254-T1
Valid prediction for snap_scaffold_26-snap.263-T1
Valid prediction for snap_scaffold_26-snap.250-T1
Valid prediction for GlimmerHMM_glimmerT_55069-T1
Valid prediction for snap_scaffold_26-snap.282-T1
Valid prediction for GlimmerHMM_glimmerT_55064-T1
Valid prediction for Augustus_model.g36506.t1
Valid prediction for GlimmerHMM_glimmerT_55058-T1
Valid prediction for snap_scaffold_26-snap.253-T1
Valid prediction for Augustus_model.g36509.t1
Valid prediction for Augustus_model.g36511.t1
Valid prediction for Augustus_model.g36505.t1
Valid prediction for snap_scaffold_26-snap.249-T1
Couldn't classify 167463, 167855
Sorry, prediction pasa_asmbl_35838.p1 fails validation.
(ATG)	 TG	167463-167855	CC	GGC
Valid prediction for snap_scaffold_26-snap.275-T1
Valid prediction for snap_scaffold_26-snap.270-T1
Valid prediction for Augustus_model.g36504.t1
Valid prediction for snap_scaffold_26-snap.281-T1
Valid prediction for snap_scaffold_26-snap.256-T1
Valid prediction for snap_scaffold_26-snap.261-T1
Valid prediction for snap_scaffold_26-snap.255-T1
Valid prediction for snap_scaffold_26-snap.269-T1
Valid prediction for GlimmerHMM_glimmerT_55057-T1
Valid prediction for GlimmerHMM_glimmerT_55073-T1
Valid prediction for GlimmerHMM_glimmerT_55071-T1
Valid prediction for GlimmerHMM_glimmerT_55060-T1
Valid prediction for snap_scaffold_26-snap.262-T1
Valid prediction for snap_scaffold_26-snap.246-T1
Valid prediction for GlimmerHMM_glimmerT_55070-T1
Valid prediction for snap_scaffold_26-snap.267-T1
Valid prediction for snap_scaffold_26-snap.244-T1
Valid prediction for snap_scaffold_26-snap.260-T1
Sorry, intron length (4) is less than minimum required (10)
Valid prediction for snap_scaffold_26-snap.272-T1
Valid prediction for snap_scaffold_26-snap.251-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_26-snap.276-T1
Valid prediction for snap_scaffold_26-snap.279-T1
Valid prediction for snap_scaffold_26-snap.252-T1
Valid prediction for Augustus_model.g36508.t1
Valid prediction for snap_scaffold_26-snap.283-T1
Valid prediction for snap_scaffold_26-snap.268-T1
Valid prediction for snap_scaffold_26-snap.245-T1
Valid prediction for GlimmerHMM_glimmerT_55074-T1
Valid prediction for Augustus_model.g36503.t1
Valid prediction for GlimmerHMM_glimmerT_55077-T1
Valid prediction for snap_scaffold_26-snap.266-T1
Valid prediction for GlimmerHMM_glimmerT_55055-T1
Valid prediction for snap_scaffold_26-snap.273-T1
Valid prediction for GlimmerHMM_glimmerT_55076-T1
Valid prediction for GlimmerHMM_glimmerT_55072-T1
Valid prediction for snap_scaffold_26-snap.271-T1
Valid prediction for snap_scaffold_26-snap.265-T1
Couldn't classify 55982, 56094
Sorry, prediction pasa_asmbl_35398.p1 fails validation.
(GGG)	 CA	55982-56094	GT	TGG
(GCG)	 AG	56439-56649	GT	AGG
(GAA)	 AG	57004-57078	GT	AGG
(TGT)	 AG	57179-57289	GT	AGG
(GTG)	 AG	57539-57722	GT	GGG
(AGT)	 AG	58383-58564	GC	AGG
(AAT)	 AG	59101-59115	CT	AAC
-recovered pasa_asmbl_35398.p1, terminal, 59101, 59115
-recovered pasa_asmbl_35398.p1, internal, 56439, 56649
-recovered pasa_asmbl_35398.p1, internal, 57004, 57078
-recovered pasa_asmbl_35398.p1, internal, 57179, 57289
-recovered pasa_asmbl_35398.p1, internal, 57539, 57722
-recovered pasa_asmbl_35398.p1, internal, 58383, 58564
Valid prediction for snap_scaffold_26-snap.264-T1
Valid prediction for snap_scaffold_26-snap.247-T1
Valid prediction for snap_scaffold_26-snap.259-T1
Valid prediction for GlimmerHMM_glimmerT_55063-T1
Valid prediction for snap_scaffold_26-snap.243-T1
Valid prediction for GlimmerHMM_glimmerT_55056-T1
Valid prediction for GlimmerHMM_glimmerT_55068-T1
Valid prediction for snap_scaffold_26-snap.248-T1
Valid prediction for snap_scaffold_26-snap.278-T1
Valid prediction for GlimmerHMM_glimmerT_55062-T1
Valid prediction for GlimmerHMM_glimmerT_55061-T1
Valid prediction for Augustus_model.g36507.t1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 6834, rend_intergenic: 1762  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 18158, rend_intergenic: 6883  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 22797, rend_intergenic: 18439  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 41589, rend_intergenic: 22995  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 66234, rend_intergenic: 42103  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 70567, rend_intergenic: 67757  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 109887, rend_intergenic: 71366  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 112155, rend_intergenic: 109899  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 126782, rend_intergenic: 112539  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 141596, rend_intergenic: 134268  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 150541, rend_intergenic: 143309  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 157827, rend_intergenic: 150549  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 161696, rend_intergenic: 158179  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 163607, rend_intergenic: 162108  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 166828, rend_intergenic: 163696  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 172876, rend_intergenic: 167565  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 190511, rend_intergenic: 179953  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 192884, rend_intergenic: 190799  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 204908, rend_intergenic: 196642  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 217249, rend_intergenic: 211203  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 220737
-exon list size: 355


building trellis

0.3    
0.6    
0.8    
1.1    
1.4    
1.7    
2.0    
2.2    
2.5    
2.8    
3.1    
3.4    
3.6    
3.9    
4.2    
4.5    
4.8    
5.0    
5.3    
5.6    
5.9    
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6.4    
6.7    
7.0    
7.3    
7.6    
7.8    
8.1    
8.4    
8.7    
9.0    
9.2    
9.5    
9.8    
10.1    
10.4    
10.6    
10.9    
11.2    
11.5    
11.8    
12.0    
12.3    
12.6    
12.9    
13.2    
13.4    
13.7    
14.0    
14.3    
14.6    
14.8    
15.1    
15.4    
15.7    
16.0    
16.2    
16.5    
16.8    
17.1    
17.4    
17.6    
17.9    
18.2    
18.5    
18.8    
19.0    
19.3    
19.6    
19.9    
20.2    
20.4    
20.7    
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21.3    
21.6    
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22.1    
22.4    
22.7    
23.0    
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23.8    
24.1    
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24.6    
24.9    
25.2    
25.5    
25.8    
26.1    
26.3    
26.6    
26.9    
27.2    
27.5    
27.7    
28.0    
28.3    
28.6    
28.9    
29.1    
29.4    
29.7    
30.0    
30.3    
30.5    
30.8    
31.1    
31.4    
31.7    
31.9    
32.2    
32.5    
32.8    
33.1    
33.3    
33.6    
33.9    
34.2    
34.5    
34.7    
35.0    
35.3    
35.6    
35.9    
36.1    
36.4    
36.7    
37.0    
37.3    
37.5    
37.8    
38.1    
38.4    
38.7    
38.9    
39.2    
39.5    
39.8    
40.1    
40.3    
40.6    
40.9    
41.2    
41.5    
41.7    
42.0    
42.3    
42.6    
42.9    
43.1    
43.4    
43.7    
44.0    
44.3    
44.5    
44.8    
45.1    
45.4    
45.7    
45.9    
46.2    
46.5    
46.8    
47.1    
47.3    
47.6    
47.9    
48.2    
48.5    
48.7    
49.0    
49.3    
49.6    
49.9    
50.1    
50.4    
50.7    
51.0    
51.3    
51.5    
51.8    
52.1    
52.4    
52.7    
52.9    
53.2    
53.5    
53.8    
54.1    
54.3    
54.6    
54.9    
55.2    
55.5    
55.7    
56.0    
56.3    
56.6    
56.9    
57.1    
57.4    
57.7    
58.0    
58.3    
58.5    
58.8    
59.1    
59.4    
59.7    
59.9    
60.2    
60.5    
60.8    
61.1    
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61.6    
61.9    
62.2    
62.5    
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63.0    
63.3    
63.6    
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64.1    
64.4    
64.7    
65.0    
65.3    
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65.8    
66.1    
66.4    
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67.2    
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68.1    
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68.6    
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77.0    
77.3    
77.6    
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78.2    
78.4    
78.7    
79.0    
79.3    
79.6    
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80.1    
80.4    
80.7    
81.0    
81.2    
81.5    
81.8    
82.1    
82.4    
82.6    
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83.2    
83.5    
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84.0    
84.3    
84.6    
84.9    
85.2    
85.4    
85.7    
86.0    
86.3    
86.6    
86.8    
87.1    
87.4    
87.7    
88.0    
88.2    
88.5    
88.8    
89.1    
89.4    
89.6    
89.9    
90.2    
90.5    
90.8    
91.0    
91.3    
91.6    
91.9    
92.2    
92.4    
92.7    
93.0    
93.3    
93.6    
93.8    
94.1    
94.4    
94.7    
95.0    
95.2    
95.5    
95.8    
96.1    
96.4    
96.6    
96.9    
97.2    
97.5    
97.8    
98.0    
98.3    
98.6    
98.9    
99.2    
99.4    
99.7    
-found 24 predictions from path traversal
Error with prediction: snap lend_intergenic: 6834, rend_intergenic: 1762  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 18158, rend_intergenic: 6883  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 22797, rend_intergenic: 18439  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 41589, rend_intergenic: 22995  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 66234, rend_intergenic: 42103  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 70567, rend_intergenic: 67757  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 109887, rend_intergenic: 71366  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 112155, rend_intergenic: 109899  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 126782, rend_intergenic: 112539  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 141596, rend_intergenic: 134268  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 150541, rend_intergenic: 143309  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 157827, rend_intergenic: 150549  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 161696, rend_intergenic: 158179  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 163607, rend_intergenic: 162108  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 166828, rend_intergenic: 163696  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 172876, rend_intergenic: 167565  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 190511, rend_intergenic: 179953  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 192884, rend_intergenic: 190799  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 204908, rend_intergenic: 196642  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 217249, rend_intergenic: 211203  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 10 predictions persist after filtering for low support