-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_2589

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 405, 543
Couldn't classify 869, 1001
Sorry, prediction snap_scaffold_2589-snap.1-T1 fails validation.
(GGG)	 AG	405-543	GT	AAG
(CCT)	 AG	869-1001	GT	AGG
-recovered snap_scaffold_2589-snap.1-T1, internal, 405, 543
-recovered snap_scaffold_2589-snap.1-T1, internal, 869, 1001
Couldn't classify 869, 1001
Sorry, prediction GlimmerHMM_glimmerT_61645-T1 fails validation.
(ATG)	 AA	383-543	GT	AAG
(CCT)	 AG	869-1001	GT	AGG
-recovered GlimmerHMM_glimmerT_61645-T1, initial, 383, 543
-recovered GlimmerHMM_glimmerT_61645-T1, internal, 869, 1001
Couldn't classify 405, 543
Couldn't classify 869, 1001
Sorry, prediction Augustus_model.g40937.t1 fails validation.
(GGG)	 AG	405-543	GT	AAG
(CCT)	 AG	869-1001	GT	AGG
-recovered Augustus_model.g40937.t1, internal, 405, 543
-recovered Augustus_model.g40937.t1, internal, 869, 1001

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1187
-exon list size: 3


building trellis

20.0    
40.0    
60.0    
80.0    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support