-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_257

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_257-snap.1-T1
Couldn't classify 914, 953
Sorry, prediction GlimmerHMM_glimmerT_60092-T1 fails validation.
(AGC)	 AG	914-953	GT	AGG
(ATG)	 AG	2302-3024	GA	AAG
-recovered GlimmerHMM_glimmerT_60092-T1, terminal, 2302, 3024
-recovered GlimmerHMM_glimmerT_60092-T1, internal, 914, 953
Couldn't classify 914, 986
Sorry, prediction snap_scaffold_257-snap.3-T1 fails validation.
(AGC)	 AG	914-986	GT	GGG
(CGG)	 AG	1818-2027	CT	GAC
-recovered snap_scaffold_257-snap.3-T1, terminal, 1818, 2027
-recovered snap_scaffold_257-snap.3-T1, internal, 914, 986
Valid prediction for Augustus_model.g39794.t1
Valid prediction for snap_scaffold_257-snap.2-T1
Valid prediction for Augustus_model.g39793.t1
Valid prediction for pasa_asmbl_34663.p1
Valid prediction for GlimmerHMM_glimmerT_60091-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 8985
-exon list size: 17


building trellis

5.3    
10.5    
15.8    
21.1    
26.3    
31.6    
36.8    
42.1    
47.4    
52.6    
57.9    
63.2    
68.4    
73.7    
78.9    
84.2    
89.5    
94.7    
-found 2 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 2 predictions persist after filtering for low support