-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_2567

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 501, 713
Couldn't classify 981, 1133
Sorry, prediction snap_scaffold_2567-snap.1-T1 fails validation.
(GCA)	 AG	501-713	GT	AGG
(AGT)	 AG	981-1133	GT	AGG
-recovered snap_scaffold_2567-snap.1-T1, internal, 501, 713
-recovered snap_scaffold_2567-snap.1-T1, internal, 981, 1133
Couldn't classify 501, 713
Couldn't classify 981, 1133
Sorry, prediction Augustus_model.g40929.t1 fails validation.
(GCA)	 AG	501-713	GT	AGG
(AGT)	 AG	981-1133	GT	AGG
-recovered Augustus_model.g40929.t1, internal, 501, 713
-recovered Augustus_model.g40929.t1, internal, 981, 1133
Couldn't classify 501, 735
Sorry, prediction GlimmerHMM_glimmerT_61639-T1 fails validation.
(GCA)	 AG	501-735	GT	AAG
(AGT)	 AG	981-985	GG	AAG
-recovered GlimmerHMM_glimmerT_61639-T1, terminal, 981, 985
-recovered GlimmerHMM_glimmerT_61639-T1, internal, 501, 735

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1201
-exon list size: 5


building trellis

14.3    
28.6    
42.9    
57.1    
71.4    
85.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support