-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_256

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for Augustus_model.g39791.t1
Couldn't classify 343, 813
Sorry, prediction GlimmerHMM_glimmerT_60090-T1 fails validation.
(GTG)	 AG	343-813	GT	AGG
(GTG)	 AG	6280-7308	GT	AGG
(GTA)	 AG	7425-7619	GT	AGG
(ACA)	 AG	8541-8753	AT	GAA
-recovered GlimmerHMM_glimmerT_60090-T1, terminal, 8541, 8753
-recovered GlimmerHMM_glimmerT_60090-T1, internal, 343, 813
-recovered GlimmerHMM_glimmerT_60090-T1, internal, 6280, 7308
-recovered GlimmerHMM_glimmerT_60090-T1, internal, 7425, 7619
Couldn't classify 343, 826
Sorry, prediction snap_scaffold_256-snap.1-T1 fails validation.
(GTG)	 AG	343-826	GT	AGG
(CGG)	 AG	2967-3151	GT	AGG
(GTG)	 AG	6280-7308	GT	AGG
(GTA)	 AG	7425-7619	GT	AGG
(ACA)	 AG	8541-8753	AT	GAA
-recovered snap_scaffold_256-snap.1-T1, terminal, 8541, 8753
-recovered snap_scaffold_256-snap.1-T1, internal, 343, 826
-recovered snap_scaffold_256-snap.1-T1, internal, 2967, 3151
-recovered snap_scaffold_256-snap.1-T1, internal, 6280, 7308
-recovered snap_scaffold_256-snap.1-T1, internal, 7425, 7619
Couldn't classify 343, 826
Sorry, prediction Augustus_model.g39792.t1 fails validation.
(GTG)	 AG	343-826	GT	AGG
(AGC)	 AG	1642-1820	AC	AAA
-recovered Augustus_model.g39792.t1, terminal, 1642, 1820
-recovered Augustus_model.g39792.t1, internal, 343, 826

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 8990
-exon list size: 13


building trellis

6.7    
13.3    
20.0    
26.7    
33.3    
40.0    
46.7    
53.3    
60.0    
66.7    
73.3    
80.0    
86.7    
93.3    
-found 2 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 2 predictions persist after filtering for low support