-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_2558

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 99, 216
Couldn't classify 1011, 1180
Sorry, prediction snap_scaffold_2558-snap.1-T1 fails validation.
(GGC)	 AG	99-216	GT	GGG
(GGC)	 AG	255-385	GT	GGG
(GGT)	 AG	476-607	GT	GGG
(GGT)	 AG	698-854	GT	GGG
(GGT)	 AG	1011-1180	GT	GGG
-recovered snap_scaffold_2558-snap.1-T1, internal, 99, 216
-recovered snap_scaffold_2558-snap.1-T1, internal, 255, 385
-recovered snap_scaffold_2558-snap.1-T1, internal, 476, 607
-recovered snap_scaffold_2558-snap.1-T1, internal, 698, 854
-recovered snap_scaffold_2558-snap.1-T1, internal, 1011, 1180

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_61636-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1206
-exon list size: 14


building trellis

6.2    
12.5    
18.8    
25.0    
31.2    
37.5    
43.8    
50.0    
56.2    
62.5    
68.8    
75.0    
81.2    
87.5    
93.8    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support