-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_2548

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 24, 112
Couldn't classify 854, 1038
Sorry, prediction snap_scaffold_2548-snap.1-T1 fails validation.
(GAG)	 AG	24-112	GT	CGG
(GCT)	 AG	456-598	GT	AGG
(TAG)	 AG	854-1038	GT	AGG
-recovered snap_scaffold_2548-snap.1-T1, internal, 24, 112
-recovered snap_scaffold_2548-snap.1-T1, internal, 456, 598
-recovered snap_scaffold_2548-snap.1-T1, internal, 854, 1038
Couldn't classify 1, 108
Sorry, prediction Augustus_model.g40925.t1 fails validation.
(TCC)	 AC	1-108	GT	TGG
(ATG)	 AG	497-598	GT	AGG
(TAG)	 AG	854-1047	CA	GAC
add_exon() Sorry, Augustus_model.g40925.t1 497-598-initial-1 is invalid.
-recovered Augustus_model.g40925.t1, initial, 497, 598
-recovered Augustus_model.g40925.t1, terminal, 854, 1047
-recovered Augustus_model.g40925.t1, internal, 497, 598

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1212
-exon list size: 5


building trellis

14.3    
28.6    
42.9    
57.1    
71.4    
85.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support