-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_254

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_254-snap.2-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_60085-T1
Couldn't classify 15, 846
Sorry, prediction pasa_asmbl_34657.p1 fails validation.
(AGA)	 CA	15-846	GT	AGG
(TGG)	 AG	1618-1787	AG	AGA
-recovered pasa_asmbl_34657.p1, terminal, 1618, 1787
Valid prediction for CodingQuarry_transcript_38845-T1
Couldn't classify 102, 750
Sorry, prediction snap_scaffold_254-snap.1-T1 fails validation.
(CTG)	 AG	102-750	GT	AAG
(TGG)	 AG	1618-1783	GT	ATG
(GAC)	 AG	3162-3233	GT	ATG
(ACT)	 AG	3269-3374	TC	GAT
-recovered snap_scaffold_254-snap.1-T1, terminal, 3269, 3374
-recovered snap_scaffold_254-snap.1-T1, internal, 102, 750
-recovered snap_scaffold_254-snap.1-T1, internal, 1618, 1783
-recovered snap_scaffold_254-snap.1-T1, internal, 3162, 3233
Couldn't classify 102, 846
Sorry, prediction GlimmerHMM_glimmerT_60086-T1 fails validation.
(CTG)	 AG	102-846	GT	AGG
(TGG)	 AG	1618-1787	AG	AGA
-recovered GlimmerHMM_glimmerT_60086-T1, terminal, 1618, 1787
-recovered GlimmerHMM_glimmerT_60086-T1, internal, 102, 846

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 8898, rend_intergenic: 5642  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 8999
-exon list size: 13


building trellis

6.7    
13.3    
20.0    
26.7    
33.3    
40.0    
46.7    
53.3    
60.0    
66.7    
73.3    
80.0    
86.7    
93.3    
-found 2 predictions from path traversal
Error with prediction: snap lend_intergenic: 8898, rend_intergenic: 5642  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 2 predictions persist after filtering for low support