-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_2533

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 59, 190
Couldn't classify 1061, 1139
Sorry, prediction snap_scaffold_2533-snap.1-T1 fails validation.
(GTG)	 AG	59-190	GT	ACG
(TCT)	 AG	235-331	GT	CGG
(TGA)	 AG	617-714	GT	TTG
(CCT)	 AG	1061-1139	GT	TTG
-recovered snap_scaffold_2533-snap.1-T1, internal, 59, 190
-recovered snap_scaffold_2533-snap.1-T1, internal, 235, 331
-recovered snap_scaffold_2533-snap.1-T1, internal, 617, 714
-recovered snap_scaffold_2533-snap.1-T1, internal, 1061, 1139
Couldn't classify 59, 212
Couldn't classify 1061, 1138
Sorry, prediction pasa_asmbl_34656.p1 fails validation.
(GTG)	 AG	59-212	GT	CTG
(TGA)	 AG	617-714	GT	TTG
(CCT)	 AG	1061-1138	TG	GTT
-recovered pasa_asmbl_34656.p1, internal, 59, 212
-recovered pasa_asmbl_34656.p1, internal, 617, 714
Couldn't classify 59, 212
Couldn't classify 1061, 1139
Sorry, prediction Augustus_model.g40921.t1 fails validation.
(GTG)	 AG	59-212	GT	CTG
(TGA)	 AG	617-714	GT	TTG
(CCT)	 AG	1061-1139	GT	TTG
-recovered Augustus_model.g40921.t1, internal, 59, 212
-recovered Augustus_model.g40921.t1, internal, 617, 714
-recovered Augustus_model.g40921.t1, internal, 1061, 1139

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1223
-exon list size: 7


building trellis

11.1    
22.2    
33.3    
44.4    
55.6    
66.7    
77.8    
88.9    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support