-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_253

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_60083-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 378, 506
Sorry, prediction Augustus_model.g39789.t1 fails validation.
(AGC)	 AG	378-506	GT	AGG
(TAG)	 AG	623-625	AG	AGA
-recovered Augustus_model.g39789.t1, terminal, 623, 625
-recovered Augustus_model.g39789.t1, internal, 378, 506
Valid prediction for snap_scaffold_253-snap.1-T1
Couldn't classify 296, 506
Sorry, prediction snap_scaffold_253-snap.2-T1 fails validation.
(CTC)	 AG	296-506	GT	AGG
(AGC)	 AG	626-631	GG	GAG
-recovered snap_scaffold_253-snap.2-T1, terminal, 626, 631
-recovered snap_scaffold_253-snap.2-T1, internal, 296, 506
Valid prediction for GlimmerHMM_glimmerT_60084-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 9000
-exon list size: 12


building trellis

7.1    
14.3    
21.4    
28.6    
35.7    
42.9    
50.0    
57.1    
64.3    
71.4    
78.6    
85.7    
92.9    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support