-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_252

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_60080-T1
add_exon() Sorry, GlimmerHMM_glimmerT_60080-T1 140-332-terminal-1 is invalid.
Valid prediction for Augustus_model.g39787.t1
add_exon() Sorry, Augustus_model.g39787.t1 140-332-terminal-1 is invalid.
Valid prediction for snap_scaffold_252-snap.1-T1
add_exon() Sorry, snap_scaffold_252-snap.1-T1 140-332-terminal-1 is invalid.

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_60081-T1
Couldn't classify 1096, 1471
Sorry, prediction snap_scaffold_252-snap.3-T1 fails validation.
(GCA)	 AG	1096-1471	GT	GGG
(GAC)	 AG	2582-2779	GA	GAG
-recovered snap_scaffold_252-snap.3-T1, terminal, 2582, 2779
-recovered snap_scaffold_252-snap.3-T1, internal, 1096, 1471
Valid prediction for snap_scaffold_252-snap.2-T1
Valid prediction for Augustus_model.g39788.t1
Valid prediction for GlimmerHMM_glimmerT_60082-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 9020
-exon list size: 11


building trellis

7.7    
15.4    
23.1    
30.8    
38.5    
46.2    
53.8    
61.5    
69.2    
76.9    
84.6    
92.3    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support