-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_2518

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_2518-snap.1-T1
add_exon() Sorry, snap_scaffold_2518-snap.1-T1 481-728-terminal-1 is invalid.
Couldn't classify 481, 708
Couldn't classify 1031, 1156
Sorry, prediction Augustus_model.g40915.t1 fails validation.
(ACA)	 AG	481-708	GT	AGG
(ATG)	 AG	1031-1156	GT	TGG
add_exon() Sorry, Augustus_model.g40915.t1 1031-1156-initial-1 is invalid.
-recovered Augustus_model.g40915.t1, initial, 1031, 1156
-recovered Augustus_model.g40915.t1, internal, 481, 708
-recovered Augustus_model.g40915.t1, internal, 1031, 1156
Valid prediction for snap_scaffold_2518-snap.2-T1
Valid prediction for GlimmerHMM_glimmerT_61628-T1
add_exon() Sorry, GlimmerHMM_glimmerT_61628-T1 481-728-terminal-1 is invalid.

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1230
-exon list size: 4


building trellis

16.7    
33.3    
50.0    
66.7    
83.3    
-found 2 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 2 predictions persist after filtering for low support