-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_2514

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_61626-T1
add_exon() Sorry, GlimmerHMM_glimmerT_61626-T1 249-415-terminal-1 is invalid.

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 251, 336
Sorry, prediction GlimmerHMM_glimmerT_61627-T1 fails validation.
(GAT)	 AG	251-336	GT	AGG
(GAA)	 AG	627-675	CC	GAC
-recovered GlimmerHMM_glimmerT_61627-T1, terminal, 627, 675
-recovered GlimmerHMM_glimmerT_61627-T1, internal, 251, 336
Couldn't classify 251, 336
Sorry, prediction Augustus_model.g40914.t1 fails validation.
(GAT)	 AG	251-336	GT	AGG
(GAA)	 AG	627-661	GT	TAG
(ATT)	 AG	945-973	CC	GAC
-recovered Augustus_model.g40914.t1, terminal, 945, 973
-recovered Augustus_model.g40914.t1, internal, 251, 336
-recovered Augustus_model.g40914.t1, internal, 627, 661

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1231
-exon list size: 7


building trellis

11.1    
22.2    
33.3    
44.4    
55.6    
66.7    
77.8    
88.9    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support