-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_251

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 1395, 1609
Couldn't classify 2454, 2553
Sorry, prediction snap_scaffold_251-snap.2-T1 fails validation.
(TCG)	 AG	1395-1609	GT	AGG
(GTG)	 AG	2454-2553	GT	ATG
-recovered snap_scaffold_251-snap.2-T1, internal, 1395, 1609
-recovered snap_scaffold_251-snap.2-T1, internal, 2454, 2553
Couldn't classify 1395, 1609
Sorry, prediction Augustus_model.g39786.t1 fails validation.
(TCG)	 AG	1395-1609	GT	AGG
(GTG)	 AG	2454-2588	GA	GAG
-recovered Augustus_model.g39786.t1, terminal, 2454, 2588
-recovered Augustus_model.g39786.t1, internal, 1395, 1609

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 7934, 8272
Sorry, prediction snap_scaffold_251-snap.1-T1 fails validation.
(ATG)	 GC	6889-6894	GT	AGG
(GCA)	 AG	7496-7597	GT	GCG
(GAG)	 AG	7934-8272	GT	AGG
-recovered snap_scaffold_251-snap.1-T1, initial, 6889, 6894
-recovered snap_scaffold_251-snap.1-T1, internal, 7496, 7597
-recovered snap_scaffold_251-snap.1-T1, internal, 7934, 8272
Valid prediction for GlimmerHMM_glimmerT_60079-T1
add_exon() Sorry, GlimmerHMM_glimmerT_60079-T1 2213-3146-terminal-1 is invalid.
Valid prediction for snap_scaffold_251-snap.3-T1
Valid prediction for snap_scaffold_251-snap.4-T1
Valid prediction for snap_scaffold_251-snap.5-T1
add_exon() Sorry, snap_scaffold_251-snap.5-T1 1776-1986-terminal-1 is invalid.
Valid prediction for GlimmerHMM_glimmerT_60078-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 2149, rend_intergenic: 1395  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 2553, rend_intergenic: 2181  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 9037
-exon list size: 19


building trellis

4.8    
9.5    
14.3    
19.0    
23.8    
28.6    
33.3    
38.1    
42.9    
47.6    
52.4    
57.1    
61.9    
66.7    
71.4    
76.2    
81.0    
85.7    
90.5    
95.2    
-found 2 predictions from path traversal
Error with prediction: snap lend_intergenic: 2149, rend_intergenic: 1395  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 2553, rend_intergenic: 2181  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support