-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_25/scaffold_25_8762838-8932210

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for Augustus_model.g36305.t1
Valid prediction for GlimmerHMM_glimmerT_54712-T1
Valid prediction for GlimmerHMM_glimmerT_54707-T1
Valid prediction for GlimmerHMM_glimmerT_54709-T1
Valid prediction for snap_scaffold_25-snap.1918-T1
Valid prediction for snap_scaffold_25-snap.1897-T1
Valid prediction for GlimmerHMM_glimmerT_54714-T1
Valid prediction for snap_scaffold_25-snap.1914-T1
Valid prediction for snap_scaffold_25-snap.1929-T1
Valid prediction for snap_scaffold_25-snap.1910-T1
Sorry, intron length (9) is less than minimum required (10)
Valid prediction for snap_scaffold_25-snap.1915-T1
Valid prediction for snap_scaffold_25-snap.1904-T1
Valid prediction for Augustus_model.g36304.t1
Valid prediction for snap_scaffold_25-snap.1906-T1
Valid prediction for snap_scaffold_25-snap.1922-T1
Valid prediction for GlimmerHMM_glimmerT_54721-T1
Valid prediction for GlimmerHMM_glimmerT_54717-T1
Valid prediction for GlimmerHMM_glimmerT_54706-T1
Valid prediction for GlimmerHMM_glimmerT_54719-T1
Valid prediction for Augustus_model.g36309.t1
Valid prediction for CodingQuarry_transcript_38823-T1
Valid prediction for Augustus_model.g36308.t1
Valid prediction for snap_scaffold_25-snap.1916-T1
Valid prediction for snap_scaffold_25-snap.1909-T1
Valid prediction for snap_scaffold_25-snap.1901-T1
Valid prediction for GlimmerHMM_glimmerT_54710-T1
Valid prediction for GlimmerHMM_glimmerT_54718-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_54722-T1
Valid prediction for snap_scaffold_25-snap.1924-T1
Valid prediction for snap_scaffold_25-snap.1912-T1
Valid prediction for snap_scaffold_25-snap.1911-T1
Valid prediction for Augustus_model.g36310.t1
Valid prediction for GlimmerHMM_glimmerT_54708-T1
Valid prediction for snap_scaffold_25-snap.1899-T1
Valid prediction for snap_scaffold_25-snap.1925-T1
Valid prediction for GlimmerHMM_glimmerT_54720-T1
Valid prediction for snap_scaffold_25-snap.1898-T1
Valid prediction for GlimmerHMM_glimmerT_54705-T1
Valid prediction for snap_scaffold_25-snap.1920-T1
Valid prediction for Augustus_model.g36311.t1
Valid prediction for snap_scaffold_25-snap.1930-T1
Valid prediction for snap_scaffold_25-snap.1913-T1
Valid prediction for snap_scaffold_25-snap.1907-T1
Valid prediction for GlimmerHMM_glimmerT_54715-T1
Valid prediction for snap_scaffold_25-snap.1908-T1
Valid prediction for snap_scaffold_25-snap.1905-T1
Valid prediction for Augustus_model.g36312.t1
Valid prediction for snap_scaffold_25-snap.1926-T1
Valid prediction for snap_scaffold_25-snap.1902-T1
Valid prediction for GlimmerHMM_glimmerT_54711-T1
Valid prediction for snap_scaffold_25-snap.1900-T1
Valid prediction for snap_scaffold_25-snap.1921-T1
Valid prediction for GlimmerHMM_glimmerT_54723-T1
Valid prediction for GlimmerHMM_glimmerT_54704-T1
Valid prediction for GlimmerHMM_glimmerT_54725-T1
Valid prediction for Augustus_model.g36306.t1
Valid prediction for Augustus_model.g36307.t1
Valid prediction for snap_scaffold_25-snap.1919-T1
Valid prediction for snap_scaffold_25-snap.1927-T1
Valid prediction for GlimmerHMM_glimmerT_54716-T1
Valid prediction for snap_scaffold_25-snap.1923-T1
Valid prediction for snap_scaffold_25-snap.1928-T1
Valid prediction for GlimmerHMM_glimmerT_54713-T1
Valid prediction for GlimmerHMM_glimmerT_54724-T1
Valid prediction for snap_scaffold_25-snap.1917-T1
Valid prediction for snap_scaffold_25-snap.1903-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 23786, rend_intergenic: 8428  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 34600, rend_intergenic: 25972  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 42541, rend_intergenic: 36708  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 44588, rend_intergenic: 42892  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 52312, rend_intergenic: 48584  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 63946, rend_intergenic: 54292  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 79918, rend_intergenic: 64765  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 90745, rend_intergenic: 84597  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 98002, rend_intergenic: 92970  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 106423, rend_intergenic: 99542  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 115348, rend_intergenic: 106903  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 129997, rend_intergenic: 119046  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 167056, rend_intergenic: 166147  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 169373
-exon list size: 269


building trellis

0.4    
0.7    
1.1    
1.5    
1.8    
2.2    
2.6    
3.0    
3.3    
3.7    
4.1    
4.4    
4.8    
5.2    
5.5    
5.9    
6.3    
6.6    
7.0    
7.4    
7.7    
8.1    
8.5    
8.9    
9.2    
9.6    
10.0    
10.3    
10.7    
11.1    
11.4    
11.8    
12.2    
12.5    
12.9    
13.3    
13.7    
14.0    
14.4    
14.8    
15.1    
15.5    
15.9    
16.2    
16.6    
17.0    
17.3    
17.7    
18.1    
18.5    
18.8    
19.2    
19.6    
19.9    
20.3    
20.7    
21.0    
21.4    
21.8    
22.1    
22.5    
22.9    
23.2    
23.6    
24.0    
24.4    
24.7    
25.1    
25.5    
25.8    
26.2    
26.6    
26.9    
27.3    
27.7    
28.0    
28.4    
28.8    
29.2    
29.5    
29.9    
30.3    
30.6    
31.0    
31.4    
31.7    
32.1    
32.5    
32.8    
33.2    
33.6    
33.9    
34.3    
34.7    
35.1    
35.4    
35.8    
36.2    
36.5    
36.9    
37.3    
37.6    
38.0    
38.4    
38.7    
39.1    
39.5    
39.9    
40.2    
40.6    
41.0    
41.3    
41.7    
42.1    
42.4    
42.8    
43.2    
43.5    
43.9    
44.3    
44.6    
45.0    
45.4    
45.8    
46.1    
46.5    
46.9    
47.2    
47.6    
48.0    
48.3    
48.7    
49.1    
49.4    
49.8    
50.2    
50.6    
50.9    
51.3    
51.7    
52.0    
52.4    
52.8    
53.1    
53.5    
53.9    
54.2    
54.6    
55.0    
55.4    
55.7    
56.1    
56.5    
56.8    
57.2    
57.6    
57.9    
58.3    
58.7    
59.0    
59.4    
59.8    
60.1    
60.5    
60.9    
61.3    
61.6    
62.0    
62.4    
62.7    
63.1    
63.5    
63.8    
64.2    
64.6    
64.9    
65.3    
65.7    
66.1    
66.4    
66.8    
67.2    
67.5    
67.9    
68.3    
68.6    
69.0    
69.4    
69.7    
70.1    
70.5    
70.8    
71.2    
71.6    
72.0    
72.3    
72.7    
73.1    
73.4    
73.8    
74.2    
74.5    
74.9    
75.3    
75.6    
76.0    
76.4    
76.8    
77.1    
77.5    
77.9    
78.2    
78.6    
79.0    
79.3    
79.7    
80.1    
80.4    
80.8    
81.2    
81.5    
81.9    
82.3    
82.7    
83.0    
83.4    
83.8    
84.1    
84.5    
84.9    
85.2    
85.6    
86.0    
86.3    
86.7    
87.1    
87.5    
87.8    
88.2    
88.6    
88.9    
89.3    
89.7    
90.0    
90.4    
90.8    
91.1    
91.5    
91.9    
92.3    
92.6    
93.0    
93.4    
93.7    
94.1    
94.5    
94.8    
95.2    
95.6    
95.9    
96.3    
96.7    
97.0    
97.4    
97.8    
98.2    
98.5    
98.9    
99.3    
99.6    
-found 25 predictions from path traversal
Error with prediction: snap lend_intergenic: 23786, rend_intergenic: 8428  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 34600, rend_intergenic: 25972  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 42541, rend_intergenic: 36708  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 44588, rend_intergenic: 42892  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 52312, rend_intergenic: 48584  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 63946, rend_intergenic: 54292  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 79918, rend_intergenic: 64765  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 90745, rend_intergenic: 84597  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 98002, rend_intergenic: 92970  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 106423, rend_intergenic: 99542  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 115348, rend_intergenic: 106903  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 129997, rend_intergenic: 119046  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 167056, rend_intergenic: 166147  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 8 predictions persist after filtering for low support