-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_25/scaffold_25_7522697-7640355

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_25-snap.1610-T1
Valid prediction for Augustus_model.g36173.t1
Valid prediction for Augustus_model.g36165.t1
Valid prediction for Augustus_model.g36168.t1
Valid prediction for snap_scaffold_25-snap.1620-T1
Valid prediction for Augustus_model.g36172.t1
Valid prediction for GlimmerHMM_glimmerT_54519-T1
Valid prediction for Augustus_model.g36161.t1
Valid prediction for snap_scaffold_25-snap.1638-T1
Valid prediction for snap_scaffold_25-snap.1623-T1
Valid prediction for GlimmerHMM_glimmerT_54503-T1
Valid prediction for Augustus_model.g36175.t1
Valid prediction for snap_scaffold_25-snap.1632-T1
Valid prediction for Augustus_model.g36171.t1
Valid prediction for Augustus_model.g36174.t1
Valid prediction for snap_scaffold_25-snap.1608-T1
Valid prediction for GlimmerHMM_glimmerT_54517-T1
Valid prediction for GlimmerHMM_glimmerT_54513-T1
Valid prediction for snap_scaffold_25-snap.1628-T1
Valid prediction for GlimmerHMM_glimmerT_54509-T1
Valid prediction for snap_scaffold_25-snap.1614-T1
Valid prediction for snap_scaffold_25-snap.1619-T1
Valid prediction for GlimmerHMM_glimmerT_54502-T1
Valid prediction for GlimmerHMM_glimmerT_54512-T1
Valid prediction for snap_scaffold_25-snap.1635-T1
Valid prediction for Augustus_model.g36167.t1
Valid prediction for snap_scaffold_25-snap.1609-T1
Valid prediction for Augustus_model.g36164.t1
Valid prediction for snap_scaffold_25-snap.1643-T1
Valid prediction for snap_scaffold_25-snap.1624-T1
Valid prediction for GlimmerHMM_glimmerT_54506-T1
Valid prediction for Augustus_model.g36166.t1
Valid prediction for GlimmerHMM_glimmerT_54514-T1
Valid prediction for snap_scaffold_25-snap.1607-T1
Valid prediction for snap_scaffold_25-snap.1626-T1
Valid prediction for snap_scaffold_25-snap.1616-T1
Valid prediction for GlimmerHMM_glimmerT_54515-T1
Valid prediction for GlimmerHMM_glimmerT_54518-T1
Valid prediction for GlimmerHMM_glimmerT_54505-T1
Valid prediction for snap_scaffold_25-snap.1630-T1
Valid prediction for GlimmerHMM_glimmerT_54508-T1
Valid prediction for snap_scaffold_25-snap.1631-T1
Valid prediction for snap_scaffold_25-snap.1603-T1
Valid prediction for GlimmerHMM_glimmerT_54507-T1
Valid prediction for snap_scaffold_25-snap.1615-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_54501-T1
Valid prediction for snap_scaffold_25-snap.1611-T1
Valid prediction for snap_scaffold_25-snap.1621-T1
Valid prediction for Augustus_model.g36176.t1
Valid prediction for snap_scaffold_25-snap.1605-T1
Valid prediction for GlimmerHMM_glimmerT_54504-T1
Valid prediction for snap_scaffold_25-snap.1640-T1
Valid prediction for GlimmerHMM_glimmerT_54520-T1
Valid prediction for Augustus_model.g36162.t1
Valid prediction for snap_scaffold_25-snap.1625-T1
Valid prediction for snap_scaffold_25-snap.1637-T1
Valid prediction for snap_scaffold_25-snap.1629-T1
Valid prediction for snap_scaffold_25-snap.1639-T1
Valid prediction for snap_scaffold_25-snap.1634-T1
Valid prediction for GlimmerHMM_glimmerT_54516-T1
Valid prediction for snap_scaffold_25-snap.1606-T1
Valid prediction for snap_scaffold_25-snap.1642-T1
Valid prediction for GlimmerHMM_glimmerT_54521-T1
Valid prediction for snap_scaffold_25-snap.1617-T1
Valid prediction for snap_scaffold_25-snap.1633-T1
Valid prediction for snap_scaffold_25-snap.1636-T1
Valid prediction for Augustus_model.g36169.t1
Valid prediction for Augustus_model.g36170.t1
Valid prediction for snap_scaffold_25-snap.1612-T1
Valid prediction for snap_scaffold_25-snap.1622-T1
Valid prediction for snap_scaffold_25-snap.1613-T1
Valid prediction for snap_scaffold_25-snap.1627-T1
Valid prediction for snap_scaffold_25-snap.1641-T1
Valid prediction for Augustus_model.g36163.t1
Valid prediction for GlimmerHMM_glimmerT_54511-T1
Valid prediction for snap_scaffold_25-snap.1604-T1
Valid prediction for snap_scaffold_25-snap.1618-T1
Valid prediction for GlimmerHMM_glimmerT_54510-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 33883, rend_intergenic: 27880  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 37144, rend_intergenic: 34122  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 55373, rend_intergenic: 51739  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 75211, rend_intergenic: 74420  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 86286, rend_intergenic: 82331  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 92541, rend_intergenic: 90711  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 101593, rend_intergenic: 98937  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 115737, rend_intergenic: 113993  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 117659
-exon list size: 226


building trellis

0.4    
0.9    
1.3    
1.8    
2.2    
2.6    
3.1    
3.5    
3.9    
4.4    
4.8    
5.3    
5.7    
6.1    
6.6    
7.0    
7.5    
7.9    
8.3    
8.8    
9.2    
9.6    
10.1    
10.5    
11.0    
11.4    
11.8    
12.3    
12.7    
13.2    
13.6    
14.0    
14.5    
14.9    
15.4    
15.8    
16.2    
16.7    
17.1    
17.5    
18.0    
18.4    
18.9    
19.3    
19.7    
20.2    
20.6    
21.1    
21.5    
21.9    
22.4    
22.8    
23.2    
23.7    
24.1    
24.6    
25.0    
25.4    
25.9    
26.3    
26.8    
27.2    
27.6    
28.1    
28.5    
28.9    
29.4    
29.8    
30.3    
30.7    
31.1    
31.6    
32.0    
32.5    
32.9    
33.3    
33.8    
34.2    
34.6    
35.1    
35.5    
36.0    
36.4    
36.8    
37.3    
37.7    
38.2    
38.6    
39.0    
39.5    
39.9    
40.4    
40.8    
41.2    
41.7    
42.1    
42.5    
43.0    
43.4    
43.9    
44.3    
44.7    
45.2    
45.6    
46.1    
46.5    
46.9    
47.4    
47.8    
48.2    
48.7    
49.1    
49.6    
50.0    
50.4    
50.9    
51.3    
51.8    
52.2    
52.6    
53.1    
53.5    
53.9    
54.4    
54.8    
55.3    
55.7    
56.1    
56.6    
57.0    
57.5    
57.9    
58.3    
58.8    
59.2    
59.6    
60.1    
60.5    
61.0    
61.4    
61.8    
62.3    
62.7    
63.2    
63.6    
64.0    
64.5    
64.9    
65.4    
65.8    
66.2    
66.7    
67.1    
67.5    
68.0    
68.4    
68.9    
69.3    
69.7    
70.2    
70.6    
71.1    
71.5    
71.9    
72.4    
72.8    
73.2    
73.7    
74.1    
74.6    
75.0    
75.4    
75.9    
76.3    
76.8    
77.2    
77.6    
78.1    
78.5    
78.9    
79.4    
79.8    
80.3    
80.7    
81.1    
81.6    
82.0    
82.5    
82.9    
83.3    
83.8    
84.2    
84.6    
85.1    
85.5    
86.0    
86.4    
86.8    
87.3    
87.7    
88.2    
88.6    
89.0    
89.5    
89.9    
90.4    
90.8    
91.2    
91.7    
92.1    
92.5    
93.0    
93.4    
93.9    
94.3    
94.7    
95.2    
95.6    
96.1    
96.5    
96.9    
97.4    
97.8    
98.2    
98.7    
99.1    
99.6    
-found 26 predictions from path traversal
Error with prediction: snap lend_intergenic: 33883, rend_intergenic: 27880  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 37144, rend_intergenic: 34122  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 55373, rend_intergenic: 51739  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 75211, rend_intergenic: 74420  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 86286, rend_intergenic: 82331  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 92541, rend_intergenic: 90711  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 101593, rend_intergenic: 98937  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 115737, rend_intergenic: 113993  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 20 predictions persist after filtering for low support