-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_25/scaffold_25_7363233-7524898

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for Augustus_model.g36154.t1
Valid prediction for snap_scaffold_25-snap.1579-T1
Valid prediction for snap_scaffold_25-snap.1582-T1
Valid prediction for GlimmerHMM_glimmerT_54494-T1
Valid prediction for GlimmerHMM_glimmerT_54488-T1
Valid prediction for snap_scaffold_25-snap.1586-T1
Valid prediction for GlimmerHMM_glimmerT_54481-T1
Valid prediction for GlimmerHMM_glimmerT_54499-T1
Valid prediction for snap_scaffold_25-snap.1591-T1
Valid prediction for GlimmerHMM_glimmerT_54491-T1
Valid prediction for snap_scaffold_25-snap.1584-T1
Valid prediction for snap_scaffold_25-snap.1599-T1
Valid prediction for Augustus_model.g36156.t1
Valid prediction for snap_scaffold_25-snap.1581-T1
Valid prediction for snap_scaffold_25-snap.1590-T1
Valid prediction for snap_scaffold_25-snap.1602-T1
Valid prediction for snap_scaffold_25-snap.1585-T1
Valid prediction for snap_scaffold_25-snap.1587-T1
Valid prediction for GlimmerHMM_glimmerT_54486-T1
Valid prediction for snap_scaffold_25-snap.1576-T1
Valid prediction for GlimmerHMM_glimmerT_54483-T1
Valid prediction for snap_scaffold_25-snap.1598-T1
Valid prediction for snap_scaffold_25-snap.1583-T1
Valid prediction for GlimmerHMM_glimmerT_54498-T1
Valid prediction for snap_scaffold_25-snap.1575-T1
Valid prediction for Augustus_model.g36153.t1
Valid prediction for GlimmerHMM_glimmerT_54496-T1
Valid prediction for GlimmerHMM_glimmerT_54487-T1
Valid prediction for Augustus_model.g36158.t1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for Augustus_model.g36152.t1
Valid prediction for snap_scaffold_25-snap.1588-T1
Valid prediction for GlimmerHMM_glimmerT_54492-T1
Valid prediction for Augustus_model.g36157.t1
Valid prediction for snap_scaffold_25-snap.1593-T1
Valid prediction for Augustus_model.g36160.t1
Valid prediction for GlimmerHMM_glimmerT_54490-T1
Valid prediction for snap_scaffold_25-snap.1595-T1
Valid prediction for snap_scaffold_25-snap.1572-T1
Valid prediction for snap_scaffold_25-snap.1601-T1
Valid prediction for GlimmerHMM_glimmerT_54497-T1
Valid prediction for snap_scaffold_25-snap.1596-T1
Valid prediction for GlimmerHMM_glimmerT_54493-T1
Valid prediction for GlimmerHMM_glimmerT_54485-T1
Valid prediction for snap_scaffold_25-snap.1578-T1
Valid prediction for snap_scaffold_25-snap.1597-T1
Valid prediction for GlimmerHMM_glimmerT_54495-T1
Valid prediction for snap_scaffold_25-snap.1594-T1
Valid prediction for snap_scaffold_25-snap.1589-T1
Valid prediction for GlimmerHMM_glimmerT_54484-T1
Valid prediction for snap_scaffold_25-snap.1577-T1
Valid prediction for snap_scaffold_25-snap.1574-T1
Valid prediction for GlimmerHMM_glimmerT_54489-T1
Valid prediction for GlimmerHMM_glimmerT_54480-T1
Valid prediction for snap_scaffold_25-snap.1573-T1
Valid prediction for snap_scaffold_25-snap.1600-T1
Valid prediction for Augustus_model.g36155.t1
Valid prediction for snap_scaffold_25-snap.1580-T1
Valid prediction for Augustus_model.g36159.t1
Valid prediction for GlimmerHMM_glimmerT_54482-T1
Valid prediction for snap_scaffold_25-snap.1592-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 152531, rend_intergenic: 150059  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 161666
-exon list size: 163


building trellis

0.6    
1.2    
1.8    
2.4    
3.0    
3.6    
4.2    
4.8    
5.5    
6.1    
6.7    
7.3    
7.9    
8.5    
9.1    
9.7    
10.3    
10.9    
11.5    
12.1    
12.7    
13.3    
13.9    
14.5    
15.2    
15.8    
16.4    
17.0    
17.6    
18.2    
18.8    
19.4    
20.0    
20.6    
21.2    
21.8    
22.4    
23.0    
23.6    
24.2    
24.8    
25.5    
26.1    
26.7    
27.3    
27.9    
28.5    
29.1    
29.7    
30.3    
30.9    
31.5    
32.1    
32.7    
33.3    
33.9    
34.5    
35.2    
35.8    
36.4    
37.0    
37.6    
38.2    
38.8    
39.4    
40.0    
40.6    
41.2    
41.8    
42.4    
43.0    
43.6    
44.2    
44.8    
45.5    
46.1    
46.7    
47.3    
47.9    
48.5    
49.1    
49.7    
50.3    
50.9    
51.5    
52.1    
52.7    
53.3    
53.9    
54.5    
55.2    
55.8    
56.4    
57.0    
57.6    
58.2    
58.8    
59.4    
60.0    
60.6    
61.2    
61.8    
62.4    
63.0    
63.6    
64.2    
64.8    
65.5    
66.1    
66.7    
67.3    
67.9    
68.5    
69.1    
69.7    
70.3    
70.9    
71.5    
72.1    
72.7    
73.3    
73.9    
74.5    
75.2    
75.8    
76.4    
77.0    
77.6    
78.2    
78.8    
79.4    
80.0    
80.6    
81.2    
81.8    
82.4    
83.0    
83.6    
84.2    
84.8    
85.5    
86.1    
86.7    
87.3    
87.9    
88.5    
89.1    
89.7    
90.3    
90.9    
91.5    
92.1    
92.7    
93.3    
93.9    
94.5    
95.2    
95.8    
96.4    
97.0    
97.6    
98.2    
98.8    
99.4    
-found 25 predictions from path traversal
Error with prediction: snap lend_intergenic: 152531, rend_intergenic: 150059  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 18 predictions persist after filtering for low support