-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_25/scaffold_25_6905317-7020940

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_25-snap.1488-T1
Valid prediction for GlimmerHMM_glimmerT_54406-T1
Valid prediction for snap_scaffold_25-snap.1465-T1
Valid prediction for GlimmerHMM_glimmerT_54398-T1
Valid prediction for snap_scaffold_25-snap.1479-T1
Valid prediction for GlimmerHMM_glimmerT_54401-T1
Valid prediction for GlimmerHMM_glimmerT_54410-T1
Valid prediction for GlimmerHMM_glimmerT_54393-T1
Valid prediction for Augustus_model.g36104.t1
Valid prediction for snap_scaffold_25-snap.1474-T1
Valid prediction for GlimmerHMM_glimmerT_54399-T1
Valid prediction for snap_scaffold_25-snap.1471-T1
Valid prediction for GlimmerHMM_glimmerT_54392-T1
Valid prediction for snap_scaffold_25-snap.1462-T1
Valid prediction for snap_scaffold_25-snap.1472-T1
Valid prediction for Augustus_model.g36107.t1
Valid prediction for GlimmerHMM_glimmerT_54409-T1
Valid prediction for Augustus_model.g36101.t1
Valid prediction for GlimmerHMM_glimmerT_54394-T1
Valid prediction for GlimmerHMM_glimmerT_54407-T1
Valid prediction for GlimmerHMM_glimmerT_54413-T1
Valid prediction for Augustus_model.g36109.t1
Valid prediction for Augustus_model.g36105.t1
Valid prediction for snap_scaffold_25-snap.1486-T1
Valid prediction for snap_scaffold_25-snap.1478-T1
Valid prediction for snap_scaffold_25-snap.1484-T1
Valid prediction for GlimmerHMM_glimmerT_54402-T1
Valid prediction for snap_scaffold_25-snap.1483-T1
Valid prediction for snap_scaffold_25-snap.1475-T1
Valid prediction for snap_scaffold_25-snap.1467-T1
Valid prediction for snap_scaffold_25-snap.1482-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_54414-T1
Valid prediction for snap_scaffold_25-snap.1476-T1
Valid prediction for Augustus_model.g36106.t1
Valid prediction for GlimmerHMM_glimmerT_54415-T1
Valid prediction for GlimmerHMM_glimmerT_54397-T1
Valid prediction for GlimmerHMM_glimmerT_54405-T1
Couldn't classify 9457, 9612
Couldn't classify 11769, 11954
Sorry, prediction pasa_asmbl_34380.p1 fails validation.
(GTG)	 AG	9457-9612	GT	TGG
(TTC)	 AG	9921-10065	GT	TGG
(GCA)	 AG	10216-10370	GT	AGG
(GTT)	 AG	10748-10882	GT	CAG
(TAC)	 AG	11769-11954	GT	AGG
-recovered pasa_asmbl_34380.p1, internal, 9457, 9612
-recovered pasa_asmbl_34380.p1, internal, 9921, 10065
-recovered pasa_asmbl_34380.p1, internal, 10216, 10370
-recovered pasa_asmbl_34380.p1, internal, 10748, 10882
-recovered pasa_asmbl_34380.p1, internal, 11769, 11954
Valid prediction for snap_scaffold_25-snap.1464-T1
Valid prediction for snap_scaffold_25-snap.1473-T1
Valid prediction for snap_scaffold_25-snap.1480-T1
Valid prediction for Augustus_model.g36113.t1
Couldn't classify 12715, 12947
Couldn't classify 13933, 14156
Sorry, prediction pasa_asmbl_34379.p2 fails validation.
(AGA)	 CG	12715-12947	GT	AGG
(GTA)	 AG	13269-13411	GT	GAG
(GTG)	 AG	13933-14156	AG	AGA
-recovered pasa_asmbl_34379.p2, internal, 13269, 13411
Couldn't classify 6997, 7122
Couldn't classify 8384, 8523
Sorry, prediction pasa_asmbl_34381.p1 fails validation.
(GAT)	 CC	6997-7122	GT	TGG
(CTC)	 AG	8048-8138	GT	AGG
(TGC)	 AG	8384-8523	TG	CGT
-recovered pasa_asmbl_34381.p1, internal, 8048, 8138
Valid prediction for snap_scaffold_25-snap.1485-T1
Couldn't classify 16302, 16421
Sorry, prediction pasa_asmbl_34378.p1 fails validation.
(CTG)	 GG	16302-16421	GT	TGG
(AAG)	 AG	16663-16980	GT	AGG
(AAA)	 AG	17151-17363	GG	GAG
-recovered pasa_asmbl_34378.p1, terminal, 17151, 17363
-recovered pasa_asmbl_34378.p1, internal, 16663, 16980
Valid prediction for Augustus_model.g36102.t1
Valid prediction for Augustus_model.g36110.t1
Valid prediction for GlimmerHMM_glimmerT_54412-T1
Valid prediction for snap_scaffold_25-snap.1470-T1
Valid prediction for HiQ_model.g36114.t1
Valid prediction for snap_scaffold_25-snap.1490-T1
Valid prediction for Augustus_model.g36111.t1
Valid prediction for GlimmerHMM_glimmerT_54395-T1
Valid prediction for GlimmerHMM_glimmerT_54396-T1
Valid prediction for GlimmerHMM_glimmerT_54408-T1
Valid prediction for snap_scaffold_25-snap.1466-T1
Valid prediction for snap_scaffold_25-snap.1487-T1
Valid prediction for snap_scaffold_25-snap.1463-T1
Valid prediction for Augustus_model.g36108.t1
Valid prediction for Augustus_model.g36103.t1
Valid prediction for GlimmerHMM_glimmerT_54411-T1
Valid prediction for GlimmerHMM_glimmerT_54416-T1
Valid prediction for snap_scaffold_25-snap.1481-T1
Valid prediction for snap_scaffold_25-snap.1477-T1
Valid prediction for GlimmerHMM_glimmerT_54404-T1
Valid prediction for GlimmerHMM_glimmerT_54400-T1
Valid prediction for snap_scaffold_25-snap.1489-T1
Valid prediction for snap_scaffold_25-snap.1469-T1
Valid prediction for GlimmerHMM_glimmerT_54403-T1
Valid prediction for snap_scaffold_25-snap.1468-T1
Valid prediction for Augustus_model.g36112.t1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 15498, rend_intergenic: 4607  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 21237, rend_intergenic: 15884  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 22931, rend_intergenic: 21273  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 27751, rend_intergenic: 22962  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 30514, rend_intergenic: 27888  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 46144, rend_intergenic: 38594  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 47406, rend_intergenic: 46171  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 56348, rend_intergenic: 47581  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 63389, rend_intergenic: 57321  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 100161, rend_intergenic: 98508  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 101726, rend_intergenic: 100190  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 102892, rend_intergenic: 102246  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 105717, rend_intergenic: 103008  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 115624
-exon list size: 246


building trellis

0.4    
0.8    
1.2    
1.6    
2.0    
2.4    
2.8    
3.2    
3.6    
4.0    
4.4    
4.8    
5.2    
5.6    
6.0    
6.5    
6.9    
7.3    
7.7    
8.1    
8.5    
8.9    
9.3    
9.7    
10.1    
10.5    
10.9    
11.3    
11.7    
12.1    
12.5    
12.9    
13.3    
13.7    
14.1    
14.5    
14.9    
15.3    
15.7    
16.1    
16.5    
16.9    
17.3    
17.7    
18.1    
18.5    
19.0    
19.4    
19.8    
20.2    
20.6    
21.0    
21.4    
21.8    
22.2    
22.6    
23.0    
23.4    
23.8    
24.2    
24.6    
25.0    
25.4    
25.8    
26.2    
26.6    
27.0    
27.4    
27.8    
28.2    
28.6    
29.0    
29.4    
29.8    
30.2    
30.6    
31.0    
31.5    
31.9    
32.3    
32.7    
33.1    
33.5    
33.9    
34.3    
34.7    
35.1    
35.5    
35.9    
36.3    
36.7    
37.1    
37.5    
37.9    
38.3    
38.7    
39.1    
39.5    
39.9    
40.3    
40.7    
41.1    
41.5    
41.9    
42.3    
42.7    
43.1    
43.5    
44.0    
44.4    
44.8    
45.2    
45.6    
46.0    
46.4    
46.8    
47.2    
47.6    
48.0    
48.4    
48.8    
49.2    
49.6    
50.0    
50.4    
50.8    
51.2    
51.6    
52.0    
52.4    
52.8    
53.2    
53.6    
54.0    
54.4    
54.8    
55.2    
55.6    
56.0    
56.5    
56.9    
57.3    
57.7    
58.1    
58.5    
58.9    
59.3    
59.7    
60.1    
60.5    
60.9    
61.3    
61.7    
62.1    
62.5    
62.9    
63.3    
63.7    
64.1    
64.5    
64.9    
65.3    
65.7    
66.1    
66.5    
66.9    
67.3    
67.7    
68.1    
68.5    
69.0    
69.4    
69.8    
70.2    
70.6    
71.0    
71.4    
71.8    
72.2    
72.6    
73.0    
73.4    
73.8    
74.2    
74.6    
75.0    
75.4    
75.8    
76.2    
76.6    
77.0    
77.4    
77.8    
78.2    
78.6    
79.0    
79.4    
79.8    
80.2    
80.6    
81.0    
81.5    
81.9    
82.3    
82.7    
83.1    
83.5    
83.9    
84.3    
84.7    
85.1    
85.5    
85.9    
86.3    
86.7    
87.1    
87.5    
87.9    
88.3    
88.7    
89.1    
89.5    
89.9    
90.3    
90.7    
91.1    
91.5    
91.9    
92.3    
92.7    
93.1    
93.5    
94.0    
94.4    
94.8    
95.2    
95.6    
96.0    
96.4    
96.8    
97.2    
97.6    
98.0    
98.4    
98.8    
99.2    
99.6    
-found 24 predictions from path traversal
Error with prediction: snap lend_intergenic: 15498, rend_intergenic: 4607  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 21237, rend_intergenic: 15884  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 22931, rend_intergenic: 21273  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 27751, rend_intergenic: 22962  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 30514, rend_intergenic: 27888  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 46144, rend_intergenic: 38594  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 47406, rend_intergenic: 46171  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 56348, rend_intergenic: 47581  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 63389, rend_intergenic: 57321  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 100161, rend_intergenic: 98508  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 101726, rend_intergenic: 100190  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 102892, rend_intergenic: 102246  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 105717, rend_intergenic: 103008  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 14 predictions persist after filtering for low support