-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_25/scaffold_25_5153786-5321557

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_54138-T1
Valid prediction for snap_scaffold_25-snap.1082-T1
Sorry, intron length (3) is less than minimum required (10)
Valid prediction for snap_scaffold_25-snap.1108-T1
Valid prediction for snap_scaffold_25-snap.1075-T1
Valid prediction for snap_scaffold_25-snap.1088-T1
Valid prediction for snap_scaffold_25-snap.1092-T1
Valid prediction for Augustus_model.g35938.t1
Valid prediction for snap_scaffold_25-snap.1104-T1
Valid prediction for snap_scaffold_25-snap.1079-T1
Valid prediction for snap_scaffold_25-snap.1076-T1
Valid prediction for snap_scaffold_25-snap.1097-T1
Valid prediction for GlimmerHMM_glimmerT_54141-T1
Valid prediction for snap_scaffold_25-snap.1100-T1
Valid prediction for Augustus_model.g35927.t1
Valid prediction for GlimmerHMM_glimmerT_54123-T1
Valid prediction for snap_scaffold_25-snap.1081-T1
Valid prediction for GlimmerHMM_glimmerT_54150-T1
Valid prediction for Augustus_model.g35942.t1
Valid prediction for snap_scaffold_25-snap.1072-T1
Valid prediction for snap_scaffold_25-snap.1086-T1
Valid prediction for snap_scaffold_25-snap.1084-T1
Valid prediction for snap_scaffold_25-snap.1099-T1
Valid prediction for snap_scaffold_25-snap.1101-T1
Valid prediction for GlimmerHMM_glimmerT_54126-T1
Valid prediction for Augustus_model.g35928.t1
Valid prediction for Augustus_model.g35932.t1
Valid prediction for GlimmerHMM_glimmerT_54144-T1
Valid prediction for GlimmerHMM_glimmerT_54146-T1
Valid prediction for GlimmerHMM_glimmerT_54121-T1
Valid prediction for GlimmerHMM_glimmerT_54137-T1
Valid prediction for snap_scaffold_25-snap.1087-T1
Valid prediction for snap_scaffold_25-snap.1096-T1
Valid prediction for snap_scaffold_25-snap.1073-T1
Valid prediction for GlimmerHMM_glimmerT_54122-T1
Valid prediction for snap_scaffold_25-snap.1080-T1
Valid prediction for snap_scaffold_25-snap.1083-T1
Valid prediction for GlimmerHMM_glimmerT_54140-T1
Valid prediction for GlimmerHMM_glimmerT_54145-T1
Valid prediction for GlimmerHMM_glimmerT_54139-T1
Valid prediction for GlimmerHMM_glimmerT_54124-T1
Valid prediction for GlimmerHMM_glimmerT_54148-T1
Valid prediction for snap_scaffold_25-snap.1105-T1
Valid prediction for snap_scaffold_25-snap.1106-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for Augustus_model.g35933.t1
Valid prediction for GlimmerHMM_glimmerT_54128-T1
Valid prediction for GlimmerHMM_glimmerT_54149-T1
Valid prediction for GlimmerHMM_glimmerT_54134-T1
Valid prediction for GlimmerHMM_glimmerT_54142-T1
Valid prediction for Augustus_model.g35940.t1
Valid prediction for snap_scaffold_25-snap.1069-T1
Valid prediction for Augustus_model.g35935.t1
Valid prediction for Augustus_model.g35941.t1
Valid prediction for Augustus_model.g35930.t1
Valid prediction for pasa_asmbl_34244.p1
Valid prediction for snap_scaffold_25-snap.1095-T1
Valid prediction for Augustus_model.g35939.t1
Valid prediction for Augustus_model.g35929.t1
Valid prediction for GlimmerHMM_glimmerT_54118-T1
Valid prediction for snap_scaffold_25-snap.1090-T1
Valid prediction for snap_scaffold_25-snap.1107-T1
Valid prediction for snap_scaffold_25-snap.1077-T1
Valid prediction for snap_scaffold_25-snap.1094-T1
Valid prediction for Augustus_model.g35943.t1
Valid prediction for GlimmerHMM_glimmerT_54133-T1
Valid prediction for snap_scaffold_25-snap.1074-T1
Valid prediction for GlimmerHMM_glimmerT_54131-T1
Valid prediction for Augustus_model.g35931.t1
Valid prediction for CodingQuarry_transcript_38724-T1
Valid prediction for snap_scaffold_25-snap.1102-T1
Valid prediction for snap_scaffold_25-snap.1093-T1
Valid prediction for GlimmerHMM_glimmerT_54130-T1
Valid prediction for snap_scaffold_25-snap.1091-T1
Valid prediction for snap_scaffold_25-snap.1089-T1
Valid prediction for CodingQuarry_transcript_38725-T1
Valid prediction for GlimmerHMM_glimmerT_54125-T1
Valid prediction for snap_scaffold_25-snap.1103-T1
Valid prediction for Augustus_model.g35926.t1
Valid prediction for GlimmerHMM_glimmerT_54135-T1
Valid prediction for GlimmerHMM_glimmerT_54120-T1
Valid prediction for Augustus_model.g35937.t1
Valid prediction for snap_scaffold_25-snap.1098-T1
Valid prediction for Augustus_model.g35934.t1
Valid prediction for GlimmerHMM_glimmerT_54132-T1
Valid prediction for snap_scaffold_25-snap.1085-T1
Valid prediction for snap_scaffold_25-snap.1071-T1
Valid prediction for GlimmerHMM_glimmerT_54119-T1
Valid prediction for snap_scaffold_25-snap.1070-T1
Valid prediction for Augustus_model.g35936.t1
Valid prediction for Augustus_model.g35925.t1
Valid prediction for GlimmerHMM_glimmerT_54147-T1
Valid prediction for GlimmerHMM_glimmerT_54136-T1
Valid prediction for GlimmerHMM_glimmerT_54127-T1
Valid prediction for CodingQuarry_transcript_38727-T1
Valid prediction for snap_scaffold_25-snap.1078-T1
Valid prediction for CodingQuarry_transcript_38726-T1
Valid prediction for GlimmerHMM_glimmerT_54129-T1
Valid prediction for HiQ_model.g35924.t1
Valid prediction for GlimmerHMM_glimmerT_54143-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 33709, rend_intergenic: 30112  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 36341, rend_intergenic: 33731  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 57504, rend_intergenic: 38622  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 70889, rend_intergenic: 69487  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 84478, rend_intergenic: 79395  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 93647, rend_intergenic: 90447  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 105817, rend_intergenic: 93687  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 110317, rend_intergenic: 105992  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 116288, rend_intergenic: 110973  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 130739, rend_intergenic: 118542  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 134447, rend_intergenic: 131628  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 151668, rend_intergenic: 141810  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 167772
-exon list size: 374


building trellis

0.3    
0.5    
0.8    
1.1    
1.3    
1.6    
1.9    
2.1    
2.4    
2.7    
2.9    
3.2    
3.5    
3.7    
4.0    
4.3    
4.5    
4.8    
5.1    
5.3    
5.6    
5.9    
6.1    
6.4    
6.6    
6.9    
7.2    
7.4    
7.7    
8.0    
8.2    
8.5    
8.8    
9.0    
9.3    
9.6    
9.8    
10.1    
10.4    
10.6    
10.9    
11.2    
11.4    
11.7    
12.0    
12.2    
12.5    
12.8    
13.0    
13.3    
13.6    
13.8    
14.1    
14.4    
14.6    
14.9    
15.2    
15.4    
15.7    
16.0    
16.2    
16.5    
16.8    
17.0    
17.3    
17.6    
17.8    
18.1    
18.4    
18.6    
18.9    
19.1    
19.4    
19.7    
19.9    
20.2    
20.5    
20.7    
21.0    
21.3    
21.5    
21.8    
22.1    
22.3    
22.6    
22.9    
23.1    
23.4    
23.7    
23.9    
24.2    
24.5    
24.7    
25.0    
25.3    
25.5    
25.8    
26.1    
26.3    
26.6    
26.9    
27.1    
27.4    
27.7    
27.9    
28.2    
28.5    
28.7    
29.0    
29.3    
29.5    
29.8    
30.1    
30.3    
30.6    
30.9    
31.1    
31.4    
31.6    
31.9    
32.2    
32.4    
32.7    
33.0    
33.2    
33.5    
33.8    
34.0    
34.3    
34.6    
34.8    
35.1    
35.4    
35.6    
35.9    
36.2    
36.4    
36.7    
37.0    
37.2    
37.5    
37.8    
38.0    
38.3    
38.6    
38.8    
39.1    
39.4    
39.6    
39.9    
40.2    
40.4    
40.7    
41.0    
41.2    
41.5    
41.8    
42.0    
42.3    
42.6    
42.8    
43.1    
43.4    
43.6    
43.9    
44.1    
44.4    
44.7    
44.9    
45.2    
45.5    
45.7    
46.0    
46.3    
46.5    
46.8    
47.1    
47.3    
47.6    
47.9    
48.1    
48.4    
48.7    
48.9    
49.2    
49.5    
49.7    
50.0    
50.3    
50.5    
50.8    
51.1    
51.3    
51.6    
51.9    
52.1    
52.4    
52.7    
52.9    
53.2    
53.5    
53.7    
54.0    
54.3    
54.5    
54.8    
55.1    
55.3    
55.6    
55.9    
56.1    
56.4    
56.6    
56.9    
57.2    
57.4    
57.7    
58.0    
58.2    
58.5    
58.8    
59.0    
59.3    
59.6    
59.8    
60.1    
60.4    
60.6    
60.9    
61.2    
61.4    
61.7    
62.0    
62.2    
62.5    
62.8    
63.0    
63.3    
63.6    
63.8    
64.1    
64.4    
64.6    
64.9    
65.2    
65.4    
65.7    
66.0    
66.2    
66.5    
66.8    
67.0    
67.3    
67.6    
67.8    
68.1    
68.4    
68.6    
68.9    
69.1    
69.4    
69.7    
69.9    
70.2    
70.5    
70.7    
71.0    
71.3    
71.5    
71.8    
72.1    
72.3    
72.6    
72.9    
73.1    
73.4    
73.7    
73.9    
74.2    
74.5    
74.7    
75.0    
75.3    
75.5    
75.8    
76.1    
76.3    
76.6    
76.9    
77.1    
77.4    
77.7    
77.9    
78.2    
78.5    
78.7    
79.0    
79.3    
79.5    
79.8    
80.1    
80.3    
80.6    
80.9    
81.1    
81.4    
81.6    
81.9    
82.2    
82.4    
82.7    
83.0    
83.2    
83.5    
83.8    
84.0    
84.3    
84.6    
84.8    
85.1    
85.4    
85.6    
85.9    
86.2    
86.4    
86.7    
87.0    
87.2    
87.5    
87.8    
88.0    
88.3    
88.6    
88.8    
89.1    
89.4    
89.6    
89.9    
90.2    
90.4    
90.7    
91.0    
91.2    
91.5    
91.8    
92.0    
92.3    
92.6    
92.8    
93.1    
93.4    
93.6    
93.9    
94.1    
94.4    
94.7    
94.9    
95.2    
95.5    
95.7    
96.0    
96.3    
96.5    
96.8    
97.1    
97.3    
97.6    
97.9    
98.1    
98.4    
98.7    
98.9    
99.2    
99.5    
99.7    
-found 35 predictions from path traversal
Error with prediction: snap lend_intergenic: 33709, rend_intergenic: 30112  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 36341, rend_intergenic: 33731  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 57504, rend_intergenic: 38622  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 70889, rend_intergenic: 69487  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 84478, rend_intergenic: 79395  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 93647, rend_intergenic: 90447  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 105817, rend_intergenic: 93687  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 110317, rend_intergenic: 105992  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 116288, rend_intergenic: 110973  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 130739, rend_intergenic: 118542  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 134447, rend_intergenic: 131628  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 151668, rend_intergenic: 141810  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 17 predictions persist after filtering for low support