-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_25/scaffold_25_4427957-4607649

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for Augustus_model.g35845.t1
Valid prediction for snap_scaffold_25-snap.943-T1
Valid prediction for Augustus_model.g35847.t1
Valid prediction for snap_scaffold_25-snap.927-T1
Valid prediction for GlimmerHMM_glimmerT_54021-T1
Valid prediction for snap_scaffold_25-snap.923-T1
Valid prediction for Augustus_model.g35860.t1
Valid prediction for Augustus_model.g35843.t1
Valid prediction for snap_scaffold_25-snap.947-T1
Valid prediction for snap_scaffold_25-snap.925-T1
Valid prediction for snap_scaffold_25-snap.934-T1
Valid prediction for GlimmerHMM_glimmerT_54015-T1
Couldn't classify 80885, 81217
Couldn't classify 81525, 81695
Sorry, prediction pasa_asmbl_33507.p1 fails validation.
(ACC)	 CC	80885-81217	GT	AGG
(GGT)	 AG	81525-81695	AG	TGA
Valid prediction for GlimmerHMM_glimmerT_54019-T1
Valid prediction for CodingQuarry_transcript_38704-T1
Valid prediction for GlimmerHMM_glimmerT_54003-T1
Valid prediction for GlimmerHMM_glimmerT_54007-T1
Valid prediction for HiQ_model.g35861.t1
Valid prediction for CodingQuarry_transcript_38709-T1
Valid prediction for snap_scaffold_25-snap.939-T1
Valid prediction for Augustus_model.g35846.t1
Valid prediction for snap_scaffold_25-snap.913-T1
Valid prediction for pasa_asmbl_33509.p1
Valid prediction for snap_scaffold_25-snap.911-T1
Valid prediction for snap_scaffold_25-snap.916-T1
Valid prediction for snap_scaffold_25-snap.946-T1
Valid prediction for Augustus_model.g35858.t1
Valid prediction for pasa_asmbl_33495.p2
Valid prediction for GlimmerHMM_glimmerT_54031-T1
Couldn't classify 29350, 29544
Sorry, prediction pasa_asmbl_33504.p1 fails validation.
(TGT)	 AG	29350-29544	GT	AGG
(AAC)	 AG	29781-29945	GT	GGG
(GGT)	 AG	30050-30090	GT	AGG
(AAC)	 AG	30260-30527	CC	GAC
-recovered pasa_asmbl_33504.p1, terminal, 30260, 30527
-recovered pasa_asmbl_33504.p1, internal, 29350, 29544
-recovered pasa_asmbl_33504.p1, internal, 29781, 29945
-recovered pasa_asmbl_33504.p1, internal, 30050, 30090
Valid prediction for snap_scaffold_25-snap.928-T1
Valid prediction for snap_scaffold_25-snap.941-T1
Valid prediction for HiQ_model.g35852.t1
Couldn't classify 142371, 142395
Sorry, prediction pasa_asmbl_33517.p1 fails validation.
(GAG)	 GA	142371-142395	GT	GGG
(ATA)	 AG	142636-142746	GT	AGG
(ACA)	 AG	143024-143156	GT	AAG
(CCT)	 AG	145590-145728	GT	AGG
(GAG)	 AG	145844-145940	GT	CAG
(TCC)	 AG	146026-146142	GT	GGG
(ACG)	 AG	146351-146478	GT	AGG
(ACG)	 AG	146605-146766	GT	GGG
(GGG)	 AG	147041-147193	GT	AGG
(GAA)	 AG	147279-147405	GT	GGG
(AAA)	 AG	147595-147650	GT	TTG
(TTT)	 AG	147748-147822	GT	AGG
(CTG)	 AG	148084-148221	GT	AAG
(ATG)	 AG	148715-148962	GT	AGG
(GGA)	 AG	149189-149711	GT	AGG
(GAC)	 AG	149850-150041	GT	AGG
(ACA)	 AG	150272-150403	GT	AGG
(CAT)	 AG	152463-152573	GT	AGG
(AGA)	 AG	152723-153445	GC	AGG
-recovered pasa_asmbl_33517.p1, initial, 148715, 148962
-recovered pasa_asmbl_33517.p1, terminal, 152723, 153445
-recovered pasa_asmbl_33517.p1, internal, 142636, 142746
-recovered pasa_asmbl_33517.p1, internal, 143024, 143156
-recovered pasa_asmbl_33517.p1, internal, 145590, 145728
-recovered pasa_asmbl_33517.p1, internal, 145844, 145940
-recovered pasa_asmbl_33517.p1, internal, 146026, 146142
-recovered pasa_asmbl_33517.p1, internal, 146351, 146478
-recovered pasa_asmbl_33517.p1, internal, 146605, 146766
-recovered pasa_asmbl_33517.p1, internal, 147041, 147193
-recovered pasa_asmbl_33517.p1, internal, 147279, 147405
-recovered pasa_asmbl_33517.p1, internal, 147595, 147650
-recovered pasa_asmbl_33517.p1, internal, 147748, 147822
-recovered pasa_asmbl_33517.p1, internal, 148084, 148221
-recovered pasa_asmbl_33517.p1, internal, 148715, 148962
-recovered pasa_asmbl_33517.p1, internal, 149189, 149711
-recovered pasa_asmbl_33517.p1, internal, 149850, 150041
-recovered pasa_asmbl_33517.p1, internal, 150272, 150403
-recovered pasa_asmbl_33517.p1, internal, 152463, 152573
-recovered pasa_asmbl_33517.p1, internal, 152723, 153445
Valid prediction for GlimmerHMM_glimmerT_54026-T1
Valid prediction for snap_scaffold_25-snap.912-T1
Valid prediction for snap_scaffold_25-snap.926-T1
Valid prediction for CodingQuarry_transcript_38710-T1
Couldn't classify 80441, 80770
Sorry, prediction pasa_asmbl_33506.p1 fails validation.
(ATG)	 GT	80441-80770	GG	GGG
Couldn't classify 116543, 116854
Sorry, prediction pasa_asmbl_33515.p2 fails validation.
(GCC)	 GT	116543-116854	GT	AGG
(GTG)	 AG	117027-117176	GT	AGG
(GTG)	 AG	117363-117503	GT	AGG
(AAG)	 AG	118047-118058	AC	AAA
-recovered pasa_asmbl_33515.p2, terminal, 118047, 118058
-recovered pasa_asmbl_33515.p2, internal, 117027, 117176
-recovered pasa_asmbl_33515.p2, internal, 117363, 117503
Valid prediction for GlimmerHMM_glimmerT_54022-T1
Valid prediction for GlimmerHMM_glimmerT_54029-T1
Valid prediction for Augustus_model.g35855.t1
Valid prediction for CodingQuarry_transcript_38703-T1
Valid prediction for CodingQuarry_transcript_38701-T1
Valid prediction for pasa_asmbl_33501.p1
Valid prediction for Augustus_model.g35842.t1
Valid prediction for GlimmerHMM_glimmerT_54005-T1
Valid prediction for snap_scaffold_25-snap.930-T1
Valid prediction for Augustus_model.g35851.t1
Valid prediction for GlimmerHMM_glimmerT_54025-T1
Valid prediction for Augustus_model.g35864.t1
Valid prediction for GlimmerHMM_glimmerT_54004-T1
Couldn't classify 115947, 115991
Sorry, prediction pasa_asmbl_33514.p1 fails validation.
(ATG)	 AG	115276-115662	GT	TCG
(AAC)	 AG	115947-115991	CC	CCC
-recovered pasa_asmbl_33514.p1, initial, 115276, 115662
-recovered pasa_asmbl_33514.p1, internal, 115276, 115662
Valid prediction for snap_scaffold_25-snap.933-T1
Valid prediction for GlimmerHMM_glimmerT_54008-T1
Valid prediction for HiQ_model.g35857.t1
Valid prediction for pasa_asmbl_33524.p1
Valid prediction for Augustus_model.g35840.t1
Couldn't classify 85419, 85579
Sorry, prediction pasa_asmbl_33508.p1 fails validation.
(GTG)	 AG	85419-85579	GT	GTG
(GTA)	 AG	86252-86467	GT	AGG
(CAT)	 AG	87338-87509	GT	AGG
(GGC)	 AG	87971-88012	GT	GGG
(ACG)	 AG	88119-88217	CA	AGC
-recovered pasa_asmbl_33508.p1, terminal, 88119, 88217
-recovered pasa_asmbl_33508.p1, internal, 85419, 85579
-recovered pasa_asmbl_33508.p1, internal, 86252, 86467
-recovered pasa_asmbl_33508.p1, internal, 87338, 87509
-recovered pasa_asmbl_33508.p1, internal, 87971, 88012
Valid prediction for CodingQuarry_transcript_38700-T1
Valid prediction for snap_scaffold_25-snap.915-T1
Valid prediction for Augustus_model.g35853.t1
Valid prediction for HiQ_model.g35841.t1
Valid prediction for snap_scaffold_25-snap.945-T1
Valid prediction for GlimmerHMM_glimmerT_54016-T1
Valid prediction for snap_scaffold_25-snap.936-T1
Valid prediction for GlimmerHMM_glimmerT_54009-T1
Valid prediction for snap_scaffold_25-snap.935-T1
Valid prediction for snap_scaffold_25-snap.942-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_54020-T1
Valid prediction for GlimmerHMM_glimmerT_54027-T1
Valid prediction for GlimmerHMM_glimmerT_54023-T1
Valid prediction for Augustus_model.g35844.t1
Valid prediction for GlimmerHMM_glimmerT_54028-T1
Valid prediction for snap_scaffold_25-snap.922-T1
Valid prediction for snap_scaffold_25-snap.931-T1
Valid prediction for snap_scaffold_25-snap.940-T1
Valid prediction for HiQ_model.g35859.t1
Couldn't classify 106455, 107798
Sorry, prediction pasa_asmbl_34196.p1 fails validation.
(GAC)	 CT	106455-107798	GT	AGG
(CCC)	 AG	107950-108051	GT	ACG
(ACG)	 AG	108171-108405	GT	TAG
(GTG)	 AG	108548-108705	GT	AGG
(AGT)	 AG	108783-108920	GT	TGG
(GCT)	 AG	109169-109292	GT	CAG
(AAA)	 AG	109368-109499	GT	TGG
(GCG)	 AG	109892-110029	GT	CCG
(CCT)	 AG	110213-110326	GT	AGG
(TGT)	 AG	110439-110512	GT	AGG
(CAA)	 AG	110706-110816	GT	TGG
(TGT)	 AG	110971-111086	GT	CGG
(GTT)	 AG	111427-111565	GT	AGG
(CTC)	 AG	111871-111991	GT	CGG
(TGG)	 AG	112216-112304	CC	GAC
-recovered pasa_asmbl_34196.p1, terminal, 112216, 112304
-recovered pasa_asmbl_34196.p1, internal, 107950, 108051
-recovered pasa_asmbl_34196.p1, internal, 108171, 108405
-recovered pasa_asmbl_34196.p1, internal, 108548, 108705
-recovered pasa_asmbl_34196.p1, internal, 108783, 108920
-recovered pasa_asmbl_34196.p1, internal, 109169, 109292
-recovered pasa_asmbl_34196.p1, internal, 109368, 109499
-recovered pasa_asmbl_34196.p1, internal, 109892, 110029
-recovered pasa_asmbl_34196.p1, internal, 110213, 110326
-recovered pasa_asmbl_34196.p1, internal, 110439, 110512
-recovered pasa_asmbl_34196.p1, internal, 110706, 110816
-recovered pasa_asmbl_34196.p1, internal, 110971, 111086
-recovered pasa_asmbl_34196.p1, internal, 111427, 111565
-recovered pasa_asmbl_34196.p1, internal, 111871, 111991
Valid prediction for Augustus_model.g35862.t1
Valid prediction for snap_scaffold_25-snap.914-T1
Valid prediction for GlimmerHMM_glimmerT_54018-T1
Valid prediction for HiQ_model.g35856.t1
Valid prediction for snap_scaffold_25-snap.924-T1
Valid prediction for snap_scaffold_25-snap.929-T1
Valid prediction for HiQ_model.g35854.t1
Valid prediction for snap_scaffold_25-snap.919-T1
Couldn't classify 86679, 86806
Sorry, prediction pasa_asmbl_34201.p2 fails validation.
(ATG)	 CT	84159-84427	GT	AGG
(GTC)	 AG	85637-85731	GT	AGG
(CAG)	 AG	86679-86806	CA	GCC
-recovered pasa_asmbl_34201.p2, initial, 84159, 84427
-recovered pasa_asmbl_34201.p2, internal, 85637, 85731
Valid prediction for HiQ_model.g35850.t1
Valid prediction for HiQ_model.g35863.t1
Valid prediction for snap_scaffold_25-snap.918-T1
Valid prediction for GlimmerHMM_glimmerT_54013-T1
Valid prediction for GlimmerHMM_glimmerT_54024-T1
Couldn't classify 7883, 7903
Sorry, prediction pasa_asmbl_34215.p1 fails validation.
(ATC)	 AC	7883-7903	GT	ACG
(GGC)	 AG	8068-8202	GT	AGG
(GAG)	 AG	8327-8449	GT	AGG
(AGG)	 AG	8556-8722	GT	AAG
(TGA)	 AG	9031-9166	GT	TGG
(GAG)	 AG	9921-10247	GA	GAG
-recovered pasa_asmbl_34215.p1, terminal, 9921, 10247
-recovered pasa_asmbl_34215.p1, internal, 8068, 8202
-recovered pasa_asmbl_34215.p1, internal, 8327, 8449
-recovered pasa_asmbl_34215.p1, internal, 8556, 8722
-recovered pasa_asmbl_34215.p1, internal, 9031, 9166
Valid prediction for snap_scaffold_25-snap.944-T1
Valid prediction for snap_scaffold_25-snap.948-T1
Valid prediction for pasa_asmbl_34213.p1
Couldn't classify 86897, 87278
Couldn't classify 87416, 87669
Sorry, prediction pasa_asmbl_34200.p1 fails validation.
(CAG)	 AG	86897-87278	GT	AGG
(ATG)	 AG	87416-87669	CC	GGC
-recovered pasa_asmbl_34200.p1, internal, 86897, 87278
Valid prediction for GlimmerHMM_glimmerT_54012-T1
Valid prediction for pasa_asmbl_34191.p1
Valid prediction for snap_scaffold_25-snap.937-T1
Valid prediction for Augustus_model.g35848.t1
Valid prediction for GlimmerHMM_glimmerT_54032-T1
Valid prediction for snap_scaffold_25-snap.932-T1
Couldn't classify 3192, 3225
Couldn't classify 6799, 6888
Sorry, prediction pasa_asmbl_34217.p1 fails validation.
(AGT)	 AC	3192-3225	GT	CTG
(ACA)	 AG	3381-3489	GT	GAG
(CAA)	 AG	3664-3698	GT	AAG
(GCA)	 AG	3948-4057	GT	AGG
(AGC)	 AG	4504-4594	GT	TTG
(ACG)	 AG	4711-4787	GT	ACG
(GGT)	 AG	4943-4979	GT	GGG
(GTC)	 AG	5145-5242	GT	GGG
(AGT)	 AG	5520-5645	GT	ACG
(AGG)	 AG	5763-5920	GT	AGG
(TGC)	 AG	6222-6357	GT	AGG
(GCC)	 AG	6512-6661	GT	AGG
(AGA)	 AG	6799-6888	TG	CAT
add_exon() Sorry, pasa_asmbl_34217.p1 3381-3489-terminal-3 is invalid.
-recovered pasa_asmbl_34217.p1, terminal, 3381, 3489
-recovered pasa_asmbl_34217.p1, internal, 3381, 3489
-recovered pasa_asmbl_34217.p1, internal, 3664, 3698
-recovered pasa_asmbl_34217.p1, internal, 3948, 4057
-recovered pasa_asmbl_34217.p1, internal, 4504, 4594
-recovered pasa_asmbl_34217.p1, internal, 4711, 4787
-recovered pasa_asmbl_34217.p1, internal, 4943, 4979
-recovered pasa_asmbl_34217.p1, internal, 5145, 5242
-recovered pasa_asmbl_34217.p1, internal, 5520, 5645
-recovered pasa_asmbl_34217.p1, internal, 5763, 5920
-recovered pasa_asmbl_34217.p1, internal, 6222, 6357
-recovered pasa_asmbl_34217.p1, internal, 6512, 6661
Valid prediction for GlimmerHMM_glimmerT_54014-T1
Valid prediction for snap_scaffold_25-snap.917-T1
Valid prediction for snap_scaffold_25-snap.920-T1
Valid prediction for Augustus_model.g35849.t1
Valid prediction for GlimmerHMM_glimmerT_54017-T1
Valid prediction for snap_scaffold_25-snap.938-T1
Valid prediction for CodingQuarry_transcript_38706-T1
Valid prediction for CodingQuarry_transcript_38705-T1
Valid prediction for GlimmerHMM_glimmerT_54010-T1
Valid prediction for pasa_asmbl_34209.p1
Valid prediction for GlimmerHMM_glimmerT_54011-T1
Valid prediction for pasa_asmbl_34205.p1
Valid prediction for CodingQuarry_transcript_38707-T1
Valid prediction for snap_scaffold_25-snap.921-T1
Valid prediction for CodingQuarry_transcript_38708-T1
Valid prediction for GlimmerHMM_glimmerT_54033-T1
Couldn't classify 106056, 106397
Sorry, prediction pasa_asmbl_34197.p1 fails validation.
(GAG)	 CT	106056-106397	TC	ACT
Couldn't classify 105484, 105785
Sorry, prediction pasa_asmbl_34198.p1 fails validation.
(ATG)	 CG	105007-105193	GT	AGG
(AAC)	 AG	105484-105785	GA	AGG
-recovered pasa_asmbl_34198.p1, initial, 105007, 105193
Valid prediction for GlimmerHMM_glimmerT_54006-T1
Valid prediction for GlimmerHMM_glimmerT_54030-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 43493, rend_intergenic: 38554  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 46858, rend_intergenic: 45571  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 69433, rend_intergenic: 67390  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 95535, rend_intergenic: 93919  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 99684, rend_intergenic: 98411  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 109489, rend_intergenic: 104269  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 143106, rend_intergenic: 140593  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 171624, rend_intergenic: 169447  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 179693
-exon list size: 448


building trellis

0.2    
0.4    
0.7    
0.9    
1.1    
1.3    
1.6    
1.8    
2.0    
2.2    
2.4    
2.7    
2.9    
3.1    
3.3    
3.6    
3.8    
4.0    
4.2    
4.4    
4.7    
4.9    
5.1    
5.3    
5.6    
5.8    
6.0    
6.2    
6.4    
6.7    
6.9    
7.1    
7.3    
7.6    
7.8    
8.0    
8.2    
8.4    
8.7    
8.9    
9.1    
9.3    
9.6    
9.8    
10.0    
10.2    
10.4    
10.7    
10.9    
11.1    
11.3    
11.6    
11.8    
12.0    
12.2    
12.4    
12.7    
12.9    
13.1    
13.3    
13.6    
13.8    
14.0    
14.2    
14.4    
14.7    
14.9    
15.1    
15.3    
15.6    
15.8    
16.0    
16.2    
16.4    
16.7    
16.9    
17.1    
17.3    
17.6    
17.8    
18.0    
18.2    
18.4    
18.7    
18.9    
19.1    
19.3    
19.6    
19.8    
20.0    
20.2    
20.4    
20.7    
20.9    
21.1    
21.3    
21.6    
21.8    
22.0    
22.2    
22.4    
22.7    
22.9    
23.1    
23.3    
23.6    
23.8    
24.0    
24.2    
24.4    
24.7    
24.9    
25.1    
25.3    
25.6    
25.8    
26.0    
26.2    
26.4    
26.7    
26.9    
27.1    
27.3    
27.6    
27.8    
28.0    
28.2    
28.4    
28.7    
28.9    
29.1    
29.3    
29.6    
29.8    
30.0    
30.2    
30.4    
30.7    
30.9    
31.1    
31.3    
31.6    
31.8    
32.0    
32.2    
32.4    
32.7    
32.9    
33.1    
33.3    
33.6    
33.8    
34.0    
34.2    
34.4    
34.7    
34.9    
35.1    
35.3    
35.6    
35.8    
36.0    
36.2    
36.4    
36.7    
36.9    
37.1    
37.3    
37.6    
37.8    
38.0    
38.2    
38.4    
38.7    
38.9    
39.1    
39.3    
39.6    
39.8    
40.0    
40.2    
40.4    
40.7    
40.9    
41.1    
41.3    
41.6    
41.8    
42.0    
42.2    
42.4    
42.7    
42.9    
43.1    
43.3    
43.6    
43.8    
44.0    
44.2    
44.4    
44.7    
44.9    
45.1    
45.3    
45.6    
45.8    
46.0    
46.2    
46.4    
46.7    
46.9    
47.1    
47.3    
47.6    
47.8    
48.0    
48.2    
48.4    
48.7    
48.9    
49.1    
49.3    
49.6    
49.8    
50.0    
50.2    
50.4    
50.7    
50.9    
51.1    
51.3    
51.6    
51.8    
52.0    
52.2    
52.4    
52.7    
52.9    
53.1    
53.3    
53.6    
53.8    
54.0    
54.2    
54.4    
54.7    
54.9    
55.1    
55.3    
55.6    
55.8    
56.0    
56.2    
56.4    
56.7    
56.9    
57.1    
57.3    
57.6    
57.8    
58.0    
58.2    
58.4    
58.7    
58.9    
59.1    
59.3    
59.6    
59.8    
60.0    
60.2    
60.4    
60.7    
60.9    
61.1    
61.3    
61.6    
61.8    
62.0    
62.2    
62.4    
62.7    
62.9    
63.1    
63.3    
63.6    
63.8    
64.0    
64.2    
64.4    
64.7    
64.9    
65.1    
65.3    
65.6    
65.8    
66.0    
66.2    
66.4    
66.7    
66.9    
67.1    
67.3    
67.6    
67.8    
68.0    
68.2    
68.4    
68.7    
68.9    
69.1    
69.3    
69.6    
69.8    
70.0    
70.2    
70.4    
70.7    
70.9    
71.1    
71.3    
71.6    
71.8    
72.0    
72.2    
72.4    
72.7    
72.9    
73.1    
73.3    
73.6    
73.8    
74.0    
74.2    
74.4    
74.7    
74.9    
75.1    
75.3    
75.6    
75.8    
76.0    
76.2    
76.4    
76.7    
76.9    
77.1    
77.3    
77.6    
77.8    
78.0    
78.2    
78.4    
78.7    
78.9    
79.1    
79.3    
79.6    
79.8    
80.0    
80.2    
80.4    
80.7    
80.9    
81.1    
81.3    
81.6    
81.8    
82.0    
82.2    
82.4    
82.7    
82.9    
83.1    
83.3    
83.6    
83.8    
84.0    
84.2    
84.4    
84.7    
84.9    
85.1    
85.3    
85.6    
85.8    
86.0    
86.2    
86.4    
86.7    
86.9    
87.1    
87.3    
87.6    
87.8    
88.0    
88.2    
88.4    
88.7    
88.9    
89.1    
89.3    
89.6    
89.8    
90.0    
90.2    
90.4    
90.7    
90.9    
91.1    
91.3    
91.6    
91.8    
92.0    
92.2    
92.4    
92.7    
92.9    
93.1    
93.3    
93.6    
93.8    
94.0    
94.2    
94.4    
94.7    
94.9    
95.1    
95.3    
95.6    
95.8    
96.0    
96.2    
96.4    
96.7    
96.9    
97.1    
97.3    
97.6    
97.8    
98.0    
98.2    
98.4    
98.7    
98.9    
99.1    
99.3    
99.6    
99.8    
-found 33 predictions from path traversal
Error with prediction: snap lend_intergenic: 43493, rend_intergenic: 38554  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 46858, rend_intergenic: 45571  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 69433, rend_intergenic: 67390  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 95535, rend_intergenic: 93919  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 99684, rend_intergenic: 98411  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 109489, rend_intergenic: 104269  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 143106, rend_intergenic: 140593  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 171624, rend_intergenic: 169447  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 29 predictions persist after filtering for low support