-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_25/scaffold_25_2932275-3196320 -reading genomic sequence. ** Processing features (+) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: +) -loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_25-snap.597-T1 Valid prediction for snap_scaffold_25-snap.601-T1 Valid prediction for Augustus_model.g35722.t1 Valid prediction for snap_scaffold_25-snap.635-T1 Valid prediction for snap_scaffold_25-snap.616-T1 Sorry, intron length (3) is less than minimum required (10) Valid prediction for GlimmerHMM_glimmerT_53826-T1 Valid prediction for snap_scaffold_25-snap.620-T1 Sorry, intron length (9) is less than minimum required (10) Valid prediction for snap_scaffold_25-snap.633-T1 Valid prediction for snap_scaffold_25-snap.604-T1 Valid prediction for GlimmerHMM_glimmerT_53811-T1 Valid prediction for snap_scaffold_25-snap.617-T1 Valid prediction for snap_scaffold_25-snap.630-T1 Valid prediction for snap_scaffold_25-snap.628-T1 Valid prediction for snap_scaffold_25-snap.624-T1 Valid prediction for snap_scaffold_25-snap.621-T1 Valid prediction for Augustus_model.g35714.t1 Valid prediction for GlimmerHMM_glimmerT_53810-T1 Valid prediction for GlimmerHMM_glimmerT_53803-T1 Valid prediction for snap_scaffold_25-snap.605-T1 Valid prediction for snap_scaffold_25-snap.609-T1 Valid prediction for snap_scaffold_25-snap.618-T1 Valid prediction for snap_scaffold_25-snap.611-T1 Valid prediction for snap_scaffold_25-snap.613-T1 Valid prediction for snap_scaffold_25-snap.607-T1 Valid prediction for GlimmerHMM_glimmerT_53816-T1 Valid prediction for GlimmerHMM_glimmerT_53808-T1 Valid prediction for GlimmerHMM_glimmerT_53825-T1 Valid prediction for snap_scaffold_25-snap.638-T1 Valid prediction for GlimmerHMM_glimmerT_53818-T1 Valid prediction for GlimmerHMM_glimmerT_53815-T1 Valid prediction for Augustus_model.g35713.t1 Valid prediction for snap_scaffold_25-snap.632-T1 Valid prediction for GlimmerHMM_glimmerT_53823-T1 Valid prediction for snap_scaffold_25-snap.600-T1 Sorry, intron length (9) is less than minimum required (10) Valid prediction for GlimmerHMM_glimmerT_53814-T1 Valid prediction for snap_scaffold_25-snap.626-T1 Valid prediction for snap_scaffold_25-snap.603-T1 -loading the search evidence (protein and EST search results, strand: +) -scoring exons (strand: +) ** Processing features (-) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: -) -loading gene prediction evidence. (strand: -)Valid prediction for Augustus_model.g35710.t1 Valid prediction for Augustus_model.g35715.t1 Valid prediction for CodingQuarry_transcript_38659-T1 Valid prediction for Augustus_model.g35717.t1 Valid prediction for HiQ_model.g35720.t1 Valid prediction for Augustus_model.g35711.t1 Valid prediction for snap_scaffold_25-snap.629-T1 Valid prediction for snap_scaffold_25-snap.606-T1 Valid prediction for snap_scaffold_25-snap.610-T1 Couldn't classify 241881, 242570 Sorry, prediction pasa_asmbl_34074.p1 fails validation. (TTC) CC 241881-242570 CA AGC Valid prediction for snap_scaffold_25-snap.615-T1 Valid prediction for GlimmerHMM_glimmerT_53804-T1 Valid prediction for Augustus_model.g35707.t1 Valid prediction for Augustus_model.g35718.t1 Valid prediction for GlimmerHMM_glimmerT_53812-T1 Valid prediction for CodingQuarry_transcript_38658-T1 Valid prediction for snap_scaffold_25-snap.636-T1 Valid prediction for snap_scaffold_25-snap.634-T1 Sorry, intron length (4) is less than minimum required (10) Valid prediction for GlimmerHMM_glimmerT_53809-T1 Valid prediction for GlimmerHMM_glimmerT_53824-T1 Valid prediction for Augustus_model.g35709.t1 Valid prediction for snap_scaffold_25-snap.608-T1 Valid prediction for snap_scaffold_25-snap.631-T1 Valid prediction for snap_scaffold_25-snap.623-T1 Valid prediction for Augustus_model.g35716.t1 Valid prediction for GlimmerHMM_glimmerT_53807-T1 Valid prediction for snap_scaffold_25-snap.612-T1 Valid prediction for HiQ_model.g35721.t1 Valid prediction for GlimmerHMM_glimmerT_53805-T1 Couldn't classify 232508, 232639 Couldn't classify 236531, 236591 Sorry, prediction pasa_asmbl_34077.p1 fails validation. (CTT) GT 232508-232639 GT AGG (GTG) AG 232878-233043 GT CGG (ATG) AG 233523-233624 GT AGG (GGA) AG 235335-235457 GT CAG (CCC) AG 235569-235678 GT AGG (GTG) AG 235874-236028 GT ATG (CCT) AG 236531-236591 CT CCC add_exon() Sorry, pasa_asmbl_34077.p1 233523-233624-initial-1 is invalid. -recovered pasa_asmbl_34077.p1, initial, 233523, 233624 -recovered pasa_asmbl_34077.p1, internal, 232878, 233043 -recovered pasa_asmbl_34077.p1, internal, 233523, 233624 -recovered pasa_asmbl_34077.p1, internal, 235335, 235457 -recovered pasa_asmbl_34077.p1, internal, 235569, 235678 -recovered pasa_asmbl_34077.p1, internal, 235874, 236028 Valid prediction for pasa_asmbl_34088.p1 Valid prediction for snap_scaffold_25-snap.627-T1 Valid prediction for GlimmerHMM_glimmerT_53827-T1 Valid prediction for Augustus_model.g35719.t1 Valid prediction for snap_scaffold_25-snap.602-T1 Couldn't classify 10736, 11084 Sorry, prediction pasa_asmbl_34111.p1 fails validation. (ATG) AA 9267-9321 GT AGG (ACC) AG 9489-9804 GT TTG (GCG) AG 9946-10047 GT AAG (ATC) AG 10342-10482 GT AGG (GAA) AG 10736-11084 GA GGG -recovered pasa_asmbl_34111.p1, initial, 9267, 9321 -recovered pasa_asmbl_34111.p1, internal, 9489, 9804 -recovered pasa_asmbl_34111.p1, internal, 9946, 10047 -recovered pasa_asmbl_34111.p1, internal, 10342, 10482 Valid prediction for snap_scaffold_25-snap.614-T1 Couldn't classify 79721, 80698 Couldn't classify 94064, 94122 Sorry, prediction pasa_asmbl_34099.p1 fails validation. (TTC) CC 79721-80698 GT AGG (AGG) AG 82045-82182 GT AGG (AAG) AG 82819-82938 GT AGG (ACT) AG 83247-83339 GT AGG (GTG) AG 83698-83907 GT AGG (GAA) AG 84046-84204 GT AGG (GAC) AG 84413-84511 GT AGG (CGA) AG 84768-84905 GT CGG (AGC) AG 85104-85283 GT AGG (GAC) AG 85700-85894 GT AGG (GTC) AG 86346-86609 GT AGG (GAC) AG 87214-87331 GT AGG (ACC) AG 89483-89589 GT AGG (ATC) AG 89751-89929 GT AGG (GAA) AG 90043-90349 GT AGG (GAG) AG 90462-90642 GT GAG (CGG) AG 91345-91461 GT TGG (AGT) AG 91575-92016 GT GGG (GAA) AG 93398-93633 GT ACG (GTG) AG 94064-94122 GT TAG add_exon() Sorry, pasa_asmbl_34099.p1 90462-90642-terminal-3 is invalid. -recovered pasa_asmbl_34099.p1, terminal, 90462, 90642 -recovered pasa_asmbl_34099.p1, internal, 82045, 82182 -recovered pasa_asmbl_34099.p1, internal, 82819, 82938 -recovered pasa_asmbl_34099.p1, internal, 83247, 83339 -recovered pasa_asmbl_34099.p1, internal, 83698, 83907 -recovered pasa_asmbl_34099.p1, internal, 84046, 84204 -recovered pasa_asmbl_34099.p1, internal, 84413, 84511 -recovered pasa_asmbl_34099.p1, internal, 84768, 84905 -recovered pasa_asmbl_34099.p1, internal, 85104, 85283 -recovered pasa_asmbl_34099.p1, internal, 85700, 85894 -recovered pasa_asmbl_34099.p1, internal, 86346, 86609 -recovered pasa_asmbl_34099.p1, internal, 87214, 87331 -recovered pasa_asmbl_34099.p1, internal, 89483, 89589 -recovered pasa_asmbl_34099.p1, internal, 89751, 89929 -recovered pasa_asmbl_34099.p1, internal, 90043, 90349 -recovered pasa_asmbl_34099.p1, internal, 90462, 90642 -recovered pasa_asmbl_34099.p1, internal, 91345, 91461 -recovered pasa_asmbl_34099.p1, internal, 91575, 92016 -recovered pasa_asmbl_34099.p1, internal, 93398, 93633 -recovered pasa_asmbl_34099.p1, internal, 94064, 94122 Valid prediction for GlimmerHMM_glimmerT_53829-T1 Valid prediction for snap_scaffold_25-snap.622-T1 Valid prediction for snap_scaffold_25-snap.596-T1 Valid prediction for snap_scaffold_25-snap.598-T1 Valid prediction for GlimmerHMM_glimmerT_53819-T1 Couldn't classify 74825, 74947 Couldn't classify 76812, 76865 Sorry, prediction pasa_asmbl_34102.p1 fails validation. (TCA) GG 74825-74947 GT AGG (GAG) AG 75111-75253 GT AGG (AGT) AG 75877-76012 GT AGG (TTG) AG 76812-76865 GT AGG -recovered pasa_asmbl_34102.p1, internal, 75111, 75253 -recovered pasa_asmbl_34102.p1, internal, 75877, 76012 -recovered pasa_asmbl_34102.p1, internal, 76812, 76865 Valid prediction for GlimmerHMM_glimmerT_53821-T1 Valid prediction for CodingQuarry_transcript_38661-T1 Valid prediction for snap_scaffold_25-snap.599-T1 Valid prediction for snap_scaffold_25-snap.637-T1 Valid prediction for Augustus_model.g35712.t1 Valid prediction for GlimmerHMM_glimmerT_53806-T1 Valid prediction for GlimmerHMM_glimmerT_53820-T1 Valid prediction for Augustus_model.g35708.t1 Valid prediction for snap_scaffold_25-snap.625-T1 Couldn't classify 17575, 17887 Sorry, prediction pasa_asmbl_34106.p1 fails validation. (ATC) CT 17575-17887 GT GAG (ACG) AG 20756-20931 GT AGG (GTT) AG 22244-22425 GT AGG (TGC) AG 24034-24166 GG GAG -recovered pasa_asmbl_34106.p1, terminal, 24034, 24166 -recovered pasa_asmbl_34106.p1, internal, 20756, 20931 -recovered pasa_asmbl_34106.p1, internal, 22244, 22425 Valid prediction for GlimmerHMM_glimmerT_53822-T1 Valid prediction for CodingQuarry_transcript_38662-T1 Valid prediction for CodingQuarry_transcript_38663-T1 Valid prediction for GlimmerHMM_glimmerT_53813-T1 Valid prediction for GlimmerHMM_glimmerT_53817-T1 Couldn't classify 236724, 236835 Couldn't classify 240754, 241283 Sorry, prediction pasa_asmbl_34075.p1 fails validation. (GAC) AG 236724-236835 GT ACG (CTG) AG 237197-237403 GT TGG (ACC) AG 237564-237781 GT GGG (CAC) AG 238078-238200 GT AGG (AGT) AG 238765-238901 GT AGG (CAG) AG 239777-239967 GT TGG (TGG) AG 240754-241283 TG AGT -recovered pasa_asmbl_34075.p1, internal, 236724, 236835 -recovered pasa_asmbl_34075.p1, internal, 237197, 237403 -recovered pasa_asmbl_34075.p1, internal, 237564, 237781 -recovered pasa_asmbl_34075.p1, internal, 238078, 238200 -recovered pasa_asmbl_34075.p1, internal, 238765, 238901 -recovered pasa_asmbl_34075.p1, internal, 239777, 239967 Valid prediction for snap_scaffold_25-snap.619-T1 Sorry, intron length (3) is less than minimum required (10) Valid prediction for GlimmerHMM_glimmerT_53828-T1 -loading the search evidence (protein and EST search results, strand: -) -scoring exons (strand: -)Error with prediction: snap lend_intergenic: 38395, rend_intergenic: 21997 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 40297, rend_intergenic: 38432 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 95822, rend_intergenic: 40352 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 107488, rend_intergenic: 95974 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 119070, rend_intergenic: 108635 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 119472, rend_intergenic: 119171 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 132323, rend_intergenic: 120284 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 133548, rend_intergenic: 133213 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 134008, rend_intergenic: 133580 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 138778, rend_intergenic: 134070 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 147198, rend_intergenic: 138908 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 175995, rend_intergenic: 151448 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 184506, rend_intergenic: 176708 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 189222, rend_intergenic: 185842 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 196170, rend_intergenic: 194546 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 197436, rend_intergenic: 196480 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 199139, rend_intergenic: 197766 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 203150, rend_intergenic: 201106 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 211905, rend_intergenic: 203168 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 214788, rend_intergenic: 213065 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 220484, rend_intergenic: 216581 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 229247, rend_intergenic: 223190 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 261262, rend_intergenic: 256359 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: GlimmerHMM lend_intergenic: 202505, rend_intergenic: 202502 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. -building DP trellis -building trellis in range 1 - 264046 -exon list size: 498 building trellis 0.2 0.4 0.6 0.8 1.0 1.2 1.4 1.6 1.8 2.0 2.2 2.4 2.6 2.8 3.0 3.2 3.4 3.6 3.8 4.0 4.2 4.4 4.6 4.8 5.0 5.2 5.4 5.6 5.8 6.0 6.2 6.4 6.6 6.8 7.0 7.2 7.4 7.6 7.8 8.0 8.2 8.4 8.6 8.8 9.0 9.2 9.4 9.6 9.8 10.0 10.2 10.4 10.6 10.8 11.0 11.2 11.4 11.6 11.8 12.0 12.2 12.4 12.6 12.8 13.0 13.2 13.4 13.6 13.8 14.0 14.2 14.4 14.6 14.8 15.0 15.2 15.4 15.6 15.8 16.0 16.2 16.4 16.6 16.8 17.0 17.2 17.4 17.6 17.8 18.0 18.2 18.4 18.6 18.8 19.0 19.2 19.4 19.6 19.8 20.0 20.2 20.4 20.6 20.8 21.0 21.2 21.4 21.6 21.8 22.0 22.2 22.4 22.6 22.8 23.0 23.2 23.4 23.6 23.8 24.0 24.2 24.4 24.6 24.8 25.0 25.2 25.4 25.6 25.8 26.0 26.2 26.4 26.6 26.8 27.0 27.2 27.4 27.6 27.8 28.0 28.2 28.4 28.6 28.8 29.0 29.2 29.4 29.6 29.8 30.0 30.2 30.4 30.6 30.8 31.0 31.2 31.4 31.6 31.8 32.0 32.2 32.4 32.6 32.8 33.0 33.2 33.4 33.6 33.8 34.0 34.2 34.4 34.6 34.8 35.0 35.2 35.4 35.6 35.8 36.0 36.2 36.4 36.6 36.8 37.0 37.2 37.4 37.6 37.8 38.0 38.2 38.4 38.6 38.8 39.0 39.2 39.4 39.6 39.8 40.0 40.2 40.4 40.6 40.8 41.0 41.2 41.4 41.6 41.8 42.0 42.2 42.4 42.6 42.8 43.0 43.2 43.4 43.6 43.8 44.0 44.2 44.4 44.6 44.8 45.0 45.2 45.4 45.6 45.8 46.0 46.2 46.4 46.6 46.8 47.0 47.2 47.4 47.6 47.8 48.0 48.2 48.4 48.6 48.8 49.0 49.2 49.4 49.6 49.8 50.0 50.2 50.4 50.6 50.8 51.0 51.2 51.4 51.6 51.8 52.0 52.2 52.4 52.6 52.8 53.0 53.2 53.4 53.6 53.8 54.0 54.2 54.4 54.6 54.8 55.0 55.2 55.4 55.6 55.8 56.0 56.2 56.4 56.6 56.8 57.0 57.2 57.4 57.6 57.8 58.0 58.2 58.4 58.6 58.8 59.0 59.2 59.4 59.6 59.8 60.0 60.2 60.4 60.6 60.8 61.0 61.2 61.4 61.6 61.8 62.0 62.2 62.4 62.6 62.8 63.0 63.2 63.4 63.6 63.8 64.0 64.2 64.4 64.6 64.8 65.0 65.2 65.4 65.6 65.8 66.0 66.2 66.4 66.6 66.8 67.0 67.2 67.4 67.6 67.8 68.0 68.2 68.4 68.6 68.8 69.0 69.2 69.4 69.6 69.8 70.0 70.2 70.4 70.6 70.8 71.0 71.2 71.4 71.6 71.8 72.0 72.2 72.4 72.6 72.8 73.0 73.2 73.4 73.6 73.8 74.0 74.2 74.4 74.6 74.8 75.0 75.2 75.4 75.6 75.8 76.0 76.2 76.4 76.6 76.8 77.0 77.2 77.4 77.6 77.8 78.0 78.2 78.4 78.6 78.8 79.0 79.2 79.4 79.6 79.8 80.0 80.2 80.4 80.6 80.8 81.0 81.2 81.4 81.6 81.8 82.0 82.2 82.4 82.6 82.8 83.0 83.2 83.4 83.6 83.8 84.0 84.2 84.4 84.6 84.8 85.0 85.2 85.4 85.6 85.8 86.0 86.2 86.4 86.6 86.8 87.0 87.2 87.4 87.6 87.8 88.0 88.2 88.4 88.6 88.8 89.0 89.2 89.4 89.6 89.8 90.0 90.2 90.4 90.6 90.8 91.0 91.2 91.4 91.6 91.8 92.0 92.2 92.4 92.6 92.8 93.0 93.2 93.4 93.6 93.8 94.0 94.2 94.4 94.6 94.8 95.0 95.2 95.4 95.6 95.8 96.0 96.2 96.4 96.6 96.8 97.0 97.2 97.4 97.6 97.8 98.0 98.2 98.4 98.6 98.8 99.0 99.2 99.4 99.6 99.8 -found 33 predictions from path traversal Error with prediction: snap lend_intergenic: 38395, rend_intergenic: 21997 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 40297, rend_intergenic: 38432 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 95822, rend_intergenic: 40352 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 107488, rend_intergenic: 95974 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 119070, rend_intergenic: 108635 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 119472, rend_intergenic: 119171 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 132323, rend_intergenic: 120284 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 133548, rend_intergenic: 133213 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 134008, rend_intergenic: 133580 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 138778, rend_intergenic: 134070 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 147198, rend_intergenic: 138908 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 175995, rend_intergenic: 151448 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 184506, rend_intergenic: 176708 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 189222, rend_intergenic: 185842 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 196170, rend_intergenic: 194546 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 197436, rend_intergenic: 196480 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 199139, rend_intergenic: 197766 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 203150, rend_intergenic: 201106 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 211905, rend_intergenic: 203168 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 214788, rend_intergenic: 213065 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 220484, rend_intergenic: 216581 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 229247, rend_intergenic: 223190 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 261262, rend_intergenic: 256359 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: GlimmerHMM lend_intergenic: 202505, rend_intergenic: 202502 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. -reporting highest scoring path thru the trellis. -found 17 predictions persist after filtering for low support -building DP trellis -building trellis in range 1 - 17543 -exon list size: 11 building trellis 7.7 15.4 23.1 30.8 38.5 46.2 53.8 61.5 69.2 76.9 84.6 92.3 -found 2 predictions from path traversal GOT 5prime partial gene. GOT 5prime partial gene. -reporting highest scoring path thru the trellis. -found 0 predictions persist after filtering for low support -building DP trellis -building trellis in range 1 - 15135 -exon list size: 7 building trellis 11.1 22.2 33.3 44.4 55.6 66.7 77.8 88.9 -found 2 predictions from path traversal GOT 5prime partial gene. GOT 5prime partial gene. -reporting highest scoring path thru the trellis. -found 0 predictions persist after filtering for low support -building DP trellis -building trellis in range 1 - 12862 -exon list size: 5 building trellis 14.3 28.6 42.9 57.1 71.4 85.7 -found 2 predictions from path traversal -reporting highest scoring path thru the trellis. -found 0 predictions persist after filtering for low support