-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_25/scaffold_25_1621755-1851905

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_25-snap.333-T1
Valid prediction for Augustus_model.g35649.t1
Valid prediction for GlimmerHMM_glimmerT_53655-T1
Valid prediction for snap_scaffold_25-snap.335-T1
Valid prediction for snap_scaffold_25-snap.352-T1
Valid prediction for snap_scaffold_25-snap.353-T1
Valid prediction for GlimmerHMM_glimmerT_53641-T1
Valid prediction for snap_scaffold_25-snap.344-T1
Valid prediction for snap_scaffold_25-snap.349-T1
Sorry, intron length (4) is less than minimum required (10)
Valid prediction for snap_scaffold_25-snap.346-T1
Valid prediction for GlimmerHMM_glimmerT_53631-T1
Valid prediction for snap_scaffold_25-snap.341-T1
Valid prediction for GlimmerHMM_glimmerT_53640-T1
Valid prediction for snap_scaffold_25-snap.319-T1
Valid prediction for snap_scaffold_25-snap.336-T1
Valid prediction for snap_scaffold_25-snap.348-T1
Valid prediction for GlimmerHMM_glimmerT_53653-T1
Valid prediction for snap_scaffold_25-snap.316-T1
Valid prediction for Augustus_model.g35651.t1
Valid prediction for snap_scaffold_25-snap.329-T1
Valid prediction for snap_scaffold_25-snap.355-T1
Valid prediction for snap_scaffold_25-snap.339-T1
Valid prediction for GlimmerHMM_glimmerT_53646-T1
Valid prediction for GlimmerHMM_glimmerT_53651-T1
Valid prediction for snap_scaffold_25-snap.331-T1
Valid prediction for snap_scaffold_25-snap.343-T1
Valid prediction for Augustus_model.g35647.t1
Valid prediction for GlimmerHMM_glimmerT_53634-T1
Valid prediction for snap_scaffold_25-snap.327-T1
Valid prediction for snap_scaffold_25-snap.325-T1
Valid prediction for GlimmerHMM_glimmerT_53652-T1
Valid prediction for GlimmerHMM_glimmerT_53632-T1
Valid prediction for snap_scaffold_25-snap.337-T1
Valid prediction for snap_scaffold_25-snap.356-T1
Valid prediction for snap_scaffold_25-snap.330-T1
Valid prediction for GlimmerHMM_glimmerT_53633-T1
Valid prediction for Augustus_model.g35648.t1
Valid prediction for GlimmerHMM_glimmerT_53648-T1
Valid prediction for snap_scaffold_25-snap.317-T1
Valid prediction for snap_scaffold_25-snap.322-T1
Valid prediction for snap_scaffold_25-snap.324-T1
Valid prediction for snap_scaffold_25-snap.321-T1
Valid prediction for snap_scaffold_25-snap.334-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_25-snap.326-T1
Valid prediction for GlimmerHMM_glimmerT_53642-T1
Valid prediction for Augustus_model.g35646.t1
Valid prediction for snap_scaffold_25-snap.351-T1
Valid prediction for Augustus_model.g35645.t1
Valid prediction for snap_scaffold_25-snap.318-T1
Valid prediction for snap_scaffold_25-snap.328-T1
Valid prediction for GlimmerHMM_glimmerT_53645-T1
Valid prediction for snap_scaffold_25-snap.340-T1
Valid prediction for GlimmerHMM_glimmerT_53638-T1
Valid prediction for Augustus_model.g35642.t1
Valid prediction for Augustus_model.g35641.t1
Valid prediction for GlimmerHMM_glimmerT_53639-T1
Valid prediction for snap_scaffold_25-snap.323-T1
Valid prediction for GlimmerHMM_glimmerT_53644-T1
Valid prediction for snap_scaffold_25-snap.350-T1
Valid prediction for snap_scaffold_25-snap.354-T1
Valid prediction for snap_scaffold_25-snap.332-T1
Valid prediction for Augustus_model.g35643.t1
Valid prediction for snap_scaffold_25-snap.342-T1
Valid prediction for GlimmerHMM_glimmerT_53647-T1
Valid prediction for GlimmerHMM_glimmerT_53635-T1
Valid prediction for Augustus_model.g35650.t1
Valid prediction for GlimmerHMM_glimmerT_53637-T1
Valid prediction for snap_scaffold_25-snap.320-T1
Valid prediction for snap_scaffold_25-snap.347-T1
Sorry, intron length (3) is less than minimum required (10)
Valid prediction for GlimmerHMM_glimmerT_53636-T1
Valid prediction for Augustus_model.g35644.t1
Valid prediction for GlimmerHMM_glimmerT_53649-T1
Valid prediction for snap_scaffold_25-snap.345-T1
Valid prediction for GlimmerHMM_glimmerT_53643-T1
Valid prediction for GlimmerHMM_glimmerT_53654-T1
Valid prediction for snap_scaffold_25-snap.338-T1
Valid prediction for GlimmerHMM_glimmerT_53650-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: GlimmerHMM lend_intergenic: 203178, rend_intergenic: 203175  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 18550, rend_intergenic: 14878  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 26658, rend_intergenic: 22573  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 28065, rend_intergenic: 26688  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 36358, rend_intergenic: 28087  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 54894, rend_intergenic: 45331  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 62753, rend_intergenic: 57638  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 68107, rend_intergenic: 65029  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 78939, rend_intergenic: 68297  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 122304, rend_intergenic: 84621  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 127786, rend_intergenic: 125049  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 135984, rend_intergenic: 128010  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 144060, rend_intergenic: 138149  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 148624, rend_intergenic: 144143  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 157201, rend_intergenic: 154296  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 159563, rend_intergenic: 157205  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 166013, rend_intergenic: 162365  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 177223, rend_intergenic: 167237  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 195293, rend_intergenic: 177362  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 206639, rend_intergenic: 195976  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 207767, rend_intergenic: 207021  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 226848, rend_intergenic: 208207  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 230151
-exon list size: 311


building trellis

0.3    
0.6    
1.0    
1.3    
1.6    
1.9    
2.2    
2.6    
2.9    
3.2    
3.5    
3.8    
4.2    
4.5    
4.8    
5.1    
5.4    
5.8    
6.1    
6.4    
6.7    
7.0    
7.3    
7.7    
8.0    
8.3    
8.6    
8.9    
9.3    
9.6    
9.9    
10.2    
10.5    
10.9    
11.2    
11.5    
11.8    
12.1    
12.5    
12.8    
13.1    
13.4    
13.7    
14.1    
14.4    
14.7    
15.0    
15.3    
15.7    
16.0    
16.3    
16.6    
16.9    
17.3    
17.6    
17.9    
18.2    
18.5    
18.8    
19.2    
19.5    
19.8    
20.1    
20.4    
20.8    
21.1    
21.4    
21.7    
22.0    
22.4    
22.7    
23.0    
23.3    
23.6    
24.0    
24.3    
24.6    
24.9    
25.2    
25.6    
25.9    
26.2    
26.5    
26.8    
27.2    
27.5    
27.8    
28.1    
28.4    
28.8    
29.1    
29.4    
29.7    
30.0    
30.4    
30.7    
31.0    
31.3    
31.6    
31.9    
32.3    
32.6    
32.9    
33.2    
33.5    
33.9    
34.2    
34.5    
34.8    
35.1    
35.5    
35.8    
36.1    
36.4    
36.7    
37.1    
37.4    
37.7    
38.0    
38.3    
38.7    
39.0    
39.3    
39.6    
39.9    
40.3    
40.6    
40.9    
41.2    
41.5    
41.9    
42.2    
42.5    
42.8    
43.1    
43.5    
43.8    
44.1    
44.4    
44.7    
45.0    
45.4    
45.7    
46.0    
46.3    
46.6    
47.0    
47.3    
47.6    
47.9    
48.2    
48.6    
48.9    
49.2    
49.5    
49.8    
50.2    
50.5    
50.8    
51.1    
51.4    
51.8    
52.1    
52.4    
52.7    
53.0    
53.4    
53.7    
54.0    
54.3    
54.6    
55.0    
55.3    
55.6    
55.9    
56.2    
56.5    
56.9    
57.2    
57.5    
57.8    
58.1    
58.5    
58.8    
59.1    
59.4    
59.7    
60.1    
60.4    
60.7    
61.0    
61.3    
61.7    
62.0    
62.3    
62.6    
62.9    
63.3    
63.6    
63.9    
64.2    
64.5    
64.9    
65.2    
65.5    
65.8    
66.1    
66.5    
66.8    
67.1    
67.4    
67.7    
68.1    
68.4    
68.7    
69.0    
69.3    
69.6    
70.0    
70.3    
70.6    
70.9    
71.2    
71.6    
71.9    
72.2    
72.5    
72.8    
73.2    
73.5    
73.8    
74.1    
74.4    
74.8    
75.1    
75.4    
75.7    
76.0    
76.4    
76.7    
77.0    
77.3    
77.6    
78.0    
78.3    
78.6    
78.9    
79.2    
79.6    
79.9    
80.2    
80.5    
80.8    
81.2    
81.5    
81.8    
82.1    
82.4    
82.7    
83.1    
83.4    
83.7    
84.0    
84.3    
84.7    
85.0    
85.3    
85.6    
85.9    
86.3    
86.6    
86.9    
87.2    
87.5    
87.9    
88.2    
88.5    
88.8    
89.1    
89.5    
89.8    
90.1    
90.4    
90.7    
91.1    
91.4    
91.7    
92.0    
92.3    
92.7    
93.0    
93.3    
93.6    
93.9    
94.2    
94.6    
94.9    
95.2    
95.5    
95.8    
96.2    
96.5    
96.8    
97.1    
97.4    
97.8    
98.1    
98.4    
98.7    
99.0    
99.4    
99.7    
-found 33 predictions from path traversal
Error with prediction: GlimmerHMM lend_intergenic: 203178, rend_intergenic: 203175  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 18550, rend_intergenic: 14878  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 26658, rend_intergenic: 22573  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 28065, rend_intergenic: 26688  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 36358, rend_intergenic: 28087  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 54894, rend_intergenic: 45331  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 62753, rend_intergenic: 57638  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 68107, rend_intergenic: 65029  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 78939, rend_intergenic: 68297  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 122304, rend_intergenic: 84621  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 127786, rend_intergenic: 125049  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 135984, rend_intergenic: 128010  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 144060, rend_intergenic: 138149  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 148624, rend_intergenic: 144143  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 157201, rend_intergenic: 154296  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 159563, rend_intergenic: 157205  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 166013, rend_intergenic: 162365  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 177223, rend_intergenic: 167237  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 195293, rend_intergenic: 177362  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 206639, rend_intergenic: 195976  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 207767, rend_intergenic: 207021  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 226848, rend_intergenic: 208207  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 17 predictions persist after filtering for low support