-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_25/scaffold_25_10098531-10331693

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_25-snap.2129-T1
Valid prediction for snap_scaffold_25-snap.2127-T1
Sorry, intron length (4) is less than minimum required (10)
Couldn't classify 91510, 92121
Sorry, prediction pasa_asmbl_33949.p1 fails validation.
(TCC)	 GC	91510-92121	AG	GTA
Valid prediction for snap_scaffold_25-snap.2131-T1
Valid prediction for GlimmerHMM_glimmerT_54869-T1
Valid prediction for GlimmerHMM_glimmerT_54874-T1
Valid prediction for snap_scaffold_25-snap.2126-T1
Valid prediction for GlimmerHMM_glimmerT_54875-T1
Couldn't classify 190241, 190573
Sorry, prediction pasa_asmbl_33861.p1 fails validation.
(CTG)	 AT	190241-190573	TC	TCT
Valid prediction for GlimmerHMM_glimmerT_54898-T1
Valid prediction for snap_scaffold_25-snap.2134-T1
Valid prediction for snap_scaffold_25-snap.2137-T1
Valid prediction for GlimmerHMM_glimmerT_54880-T1
Valid prediction for snap_scaffold_25-snap.2148-T1
Valid prediction for GlimmerHMM_glimmerT_54879-T1
Valid prediction for snap_scaffold_25-snap.2141-T1
Valid prediction for snap_scaffold_25-snap.2143-T1
Valid prediction for snap_scaffold_25-snap.2128-T1
Valid prediction for GlimmerHMM_glimmerT_54893-T1
Valid prediction for GlimmerHMM_glimmerT_54873-T1
Valid prediction for GlimmerHMM_glimmerT_54872-T1
Valid prediction for GlimmerHMM_glimmerT_54876-T1
Valid prediction for snap_scaffold_25-snap.2149-T1
Valid prediction for GlimmerHMM_glimmerT_54883-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for CodingQuarry_transcript_38843-T1
Valid prediction for snap_scaffold_25-snap.2140-T1
Valid prediction for snap_scaffold_25-snap.2147-T1
Valid prediction for GlimmerHMM_glimmerT_54881-T1
Valid prediction for GlimmerHMM_glimmerT_54897-T1
Valid prediction for pasa_asmbl_34541.p1
Valid prediction for GlimmerHMM_glimmerT_54889-T1
Valid prediction for GlimmerHMM_glimmerT_54871-T1
Valid prediction for GlimmerHMM_glimmerT_54870-T1
Valid prediction for snap_scaffold_25-snap.2136-T1
Valid prediction for snap_scaffold_25-snap.2120-T1
Valid prediction for GlimmerHMM_glimmerT_54895-T1
Valid prediction for snap_scaffold_25-snap.2124-T1
Valid prediction for snap_scaffold_25-snap.2135-T1
Valid prediction for GlimmerHMM_glimmerT_54878-T1
Valid prediction for snap_scaffold_25-snap.2145-T1
Valid prediction for GlimmerHMM_glimmerT_54896-T1
Valid prediction for GlimmerHMM_glimmerT_54884-T1
Valid prediction for snap_scaffold_25-snap.2142-T1
Valid prediction for snap_scaffold_25-snap.2139-T1
Valid prediction for GlimmerHMM_glimmerT_54894-T1
Valid prediction for GlimmerHMM_glimmerT_54886-T1
Valid prediction for GlimmerHMM_glimmerT_54891-T1
Valid prediction for GlimmerHMM_glimmerT_54882-T1
Valid prediction for snap_scaffold_25-snap.2138-T1
Valid prediction for GlimmerHMM_glimmerT_54892-T1
Valid prediction for GlimmerHMM_glimmerT_54887-T1
Valid prediction for snap_scaffold_25-snap.2121-T1
Valid prediction for GlimmerHMM_glimmerT_54877-T1
Valid prediction for snap_scaffold_25-snap.2144-T1
Valid prediction for snap_scaffold_25-snap.2146-T1
Valid prediction for snap_scaffold_25-snap.2118-T1
Valid prediction for snap_scaffold_25-snap.2133-T1
Valid prediction for snap_scaffold_25-snap.2122-T1
Valid prediction for snap_scaffold_25-snap.2123-T1
Valid prediction for GlimmerHMM_glimmerT_54890-T1
Valid prediction for snap_scaffold_25-snap.2119-T1
Valid prediction for snap_scaffold_25-snap.2130-T1
Valid prediction for snap_scaffold_25-snap.2150-T1
Valid prediction for GlimmerHMM_glimmerT_54885-T1
Valid prediction for snap_scaffold_25-snap.2132-T1
Valid prediction for GlimmerHMM_glimmerT_54888-T1
Valid prediction for snap_scaffold_25-snap.2125-T1
Valid prediction for pasa_asmbl_34539.p1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 75384, rend_intergenic: 70310  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 231722, rend_intergenic: 229942  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 233163
-exon list size: 199


building trellis

0.5    
1.0    
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2.0    
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6.0    
6.5    
7.0    
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8.0    
8.5    
9.0    
9.5    
10.0    
10.4    
10.9    
11.4    
11.9    
12.4    
12.9    
13.4    
13.9    
14.4    
14.9    
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18.4    
18.9    
19.4    
19.9    
20.4    
20.9    
21.4    
21.9    
22.4    
22.9    
23.4    
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24.4    
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25.4    
25.9    
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27.9    
28.4    
28.9    
29.4    
29.9    
30.3    
30.8    
31.3    
31.8    
32.3    
32.8    
33.3    
33.8    
34.3    
34.8    
35.3    
35.8    
36.3    
36.8    
37.3    
37.8    
38.3    
38.8    
39.3    
39.8    
40.3    
40.8    
41.3    
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42.3    
42.8    
43.3    
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45.8    
46.3    
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48.3    
48.8    
49.3    
49.8    
50.2    
50.7    
51.2    
51.7    
52.2    
52.7    
53.2    
53.7    
54.2    
54.7    
55.2    
55.7    
56.2    
56.7    
57.2    
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58.2    
58.7    
59.2    
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60.2    
60.7    
61.2    
61.7    
62.2    
62.7    
63.2    
63.7    
64.2    
64.7    
65.2    
65.7    
66.2    
66.7    
67.2    
67.7    
68.2    
68.7    
69.2    
69.7    
70.1    
70.6    
71.1    
71.6    
72.1    
72.6    
73.1    
73.6    
74.1    
74.6    
75.1    
75.6    
76.1    
76.6    
77.1    
77.6    
78.1    
78.6    
79.1    
79.6    
80.1    
80.6    
81.1    
81.6    
82.1    
82.6    
83.1    
83.6    
84.1    
84.6    
85.1    
85.6    
86.1    
86.6    
87.1    
87.6    
88.1    
88.6    
89.1    
89.6    
90.0    
90.5    
91.0    
91.5    
92.0    
92.5    
93.0    
93.5    
94.0    
94.5    
95.0    
95.5    
96.0    
96.5    
97.0    
97.5    
98.0    
98.5    
99.0    
99.5    
-found 31 predictions from path traversal
Error with prediction: snap lend_intergenic: 75384, rend_intergenic: 70310  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 231722, rend_intergenic: 229942  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 26 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 1 - 13000
-exon list size: 5


building trellis

14.3    
28.6    
42.9    
57.1    
71.4    
85.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support