-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_2496

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 4, 261
Couldn't classify 1025, 1201
Sorry, prediction pasa_asmbl_33312.p1 fails validation.
(CCC)	 TC	4-261	GT	AGG
(GAG)	 AG	425-523	GT	AGG
(GAG)	 AG	1025-1201	CT	CCC
-recovered pasa_asmbl_33312.p1, internal, 425, 523
Couldn't classify 86, 261
Couldn't classify 1025, 1189
Sorry, prediction snap_scaffold_2496-snap.1-T1 fails validation.
(ACA)	 AG	86-261	GT	AGG
(GAG)	 AG	425-523	GT	AGG
(GAG)	 AG	1025-1189	GT	ATG
-recovered snap_scaffold_2496-snap.1-T1, internal, 86, 261
-recovered snap_scaffold_2496-snap.1-T1, internal, 425, 523
-recovered snap_scaffold_2496-snap.1-T1, internal, 1025, 1189
Couldn't classify 86, 261
Couldn't classify 1025, 1189
Sorry, prediction Augustus_model.g40913.t1 fails validation.
(ACA)	 AG	86-261	GT	AGG
(GAG)	 AG	425-523	GT	AGG
(GAG)	 AG	1025-1189	GT	ATG
-recovered Augustus_model.g40913.t1, internal, 86, 261
-recovered Augustus_model.g40913.t1, internal, 425, 523
-recovered Augustus_model.g40913.t1, internal, 1025, 1189
Valid prediction for GlimmerHMM_glimmerT_61623-T1
add_exon() Sorry, GlimmerHMM_glimmerT_61623-T1 86-297-terminal-1 is invalid.

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_61624-T1
add_exon() Sorry, GlimmerHMM_glimmerT_61624-T1 713-891-terminal-1 is invalid.

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1245
-exon list size: 3


building trellis

20.0    
40.0    
60.0    
80.0    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support