-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_2494

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 854, 1114
Sorry, prediction Augustus_model.g40912.t1 fails validation.
(ATG)	 CT	88-189	GT	AGG
(GGG)	 AG	297-386	GT	AGG
(AAA)	 AG	854-1114	GT	AGG
-recovered Augustus_model.g40912.t1, initial, 88, 189
-recovered Augustus_model.g40912.t1, internal, 297, 386
-recovered Augustus_model.g40912.t1, internal, 854, 1114
Couldn't classify 105, 386
Sorry, prediction GlimmerHMM_glimmerT_61622-T1 fails validation.
(GAT)	 AG	105-386	GT	AGG
(AAA)	 AG	854-1162	GA	AGG
-recovered GlimmerHMM_glimmerT_61622-T1, terminal, 854, 1162
-recovered GlimmerHMM_glimmerT_61622-T1, internal, 105, 386
Couldn't classify 79, 197
Sorry, prediction snap_scaffold_2494-snap.1-T1 fails validation.
(GCC)	 AG	79-197	GT	TGG
(GGA)	 AG	236-386	GT	AGG
(AAA)	 AG	854-1162	GA	AGG
-recovered snap_scaffold_2494-snap.1-T1, terminal, 854, 1162
-recovered snap_scaffold_2494-snap.1-T1, internal, 79, 197
-recovered snap_scaffold_2494-snap.1-T1, internal, 236, 386

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1246
-exon list size: 9


building trellis

9.1    
18.2    
27.3    
36.4    
45.5    
54.5    
63.6    
72.7    
81.8    
90.9    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support