-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_248

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 2199, 2356
Couldn't classify 7149, 7241
Sorry, prediction snap_scaffold_248-snap.1-T1 fails validation.
(GAG)	 AG	2199-2356	GT	GGG
(GAT)	 AG	7068-7135	GT	TGG
(GGA)	 AG	7149-7241	GT	TCG
-recovered snap_scaffold_248-snap.1-T1, internal, 2199, 2356
-recovered snap_scaffold_248-snap.1-T1, internal, 7068, 7135
-recovered snap_scaffold_248-snap.1-T1, internal, 7149, 7241

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_248-snap.2-T1
Valid prediction for GlimmerHMM_glimmerT_60074-T1
Couldn't classify 2352, 2494
Sorry, prediction snap_scaffold_248-snap.4-T1 fails validation.
(AGC)	 AG	2352-2494	GT	TGG
(GAG)	 AG	3219-3244	GT	TGG
(GAA)	 AG	3319-3581	GT	GGG
(AAG)	 AG	5485-5731	GA	AAG
-recovered snap_scaffold_248-snap.4-T1, terminal, 5485, 5731
-recovered snap_scaffold_248-snap.4-T1, internal, 2352, 2494
-recovered snap_scaffold_248-snap.4-T1, internal, 3219, 3244
-recovered snap_scaffold_248-snap.4-T1, internal, 3319, 3581
Valid prediction for snap_scaffold_248-snap.3-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 7241, rend_intergenic: 2685  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 9119
-exon list size: 17


building trellis

5.3    
10.5    
15.8    
21.1    
26.3    
31.6    
36.8    
42.1    
47.4    
52.6    
57.9    
63.2    
68.4    
73.7    
78.9    
84.2    
89.5    
94.7    
-found 2 predictions from path traversal
Error with prediction: snap lend_intergenic: 7241, rend_intergenic: 2685  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support