-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_2477

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 297, 408
Couldn't classify 1060, 1209
Sorry, prediction pasa_asmbl_33307.p1 fails validation.
(TTC)	 AG	297-408	GT	CTG
(GCT)	 AG	702-880	GT	AGG
(GGC)	 AG	1060-1209	GT	AGG
-recovered pasa_asmbl_33307.p1, internal, 297, 408
-recovered pasa_asmbl_33307.p1, internal, 702, 880
-recovered pasa_asmbl_33307.p1, internal, 1060, 1209
Couldn't classify 297, 408
Couldn't classify 1060, 1209
Sorry, prediction Augustus_model.g40907.t1 fails validation.
(TTC)	 AG	297-408	GT	CTG
(GCT)	 AG	702-880	GT	AGG
(GGC)	 AG	1060-1209	GT	AGG
-recovered Augustus_model.g40907.t1, internal, 297, 408
-recovered Augustus_model.g40907.t1, internal, 702, 880
-recovered Augustus_model.g40907.t1, internal, 1060, 1209
Couldn't classify 297, 408
Couldn't classify 1060, 1209
Sorry, prediction snap_scaffold_2477-snap.1-T1 fails validation.
(TTC)	 AG	297-408	GT	CTG
(GCT)	 AG	702-880	GT	AGG
(GGC)	 AG	1060-1209	GT	AGG
-recovered snap_scaffold_2477-snap.1-T1, internal, 297, 408
-recovered snap_scaffold_2477-snap.1-T1, internal, 702, 880
-recovered snap_scaffold_2477-snap.1-T1, internal, 1060, 1209
Couldn't classify 1060, 1229
Sorry, prediction GlimmerHMM_glimmerT_61618-T1 fails validation.
(ATG)	 AG	330-408	GT	CTG
(GCT)	 AG	702-880	GT	AGG
(GGC)	 AG	1060-1229	GT	GGG
-recovered GlimmerHMM_glimmerT_61618-T1, initial, 330, 408
-recovered GlimmerHMM_glimmerT_61618-T1, internal, 330, 408
-recovered GlimmerHMM_glimmerT_61618-T1, internal, 702, 880
-recovered GlimmerHMM_glimmerT_61618-T1, internal, 1060, 1229

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1261
-exon list size: 6


building trellis

12.5    
25.0    
37.5    
50.0    
62.5    
75.0    
87.5    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support