-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_247

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_247-snap.2-T1
Couldn't classify 8905, 8974
Sorry, prediction snap_scaffold_247-snap.3-T1 fails validation.
(ATG)	 AG	8270-8330	GT	TGG
(GGG)	 AG	8439-8571	GT	CAG
(GCA)	 AG	8905-8974	GT	TGG
-recovered snap_scaffold_247-snap.3-T1, initial, 8270, 8330
-recovered snap_scaffold_247-snap.3-T1, internal, 8270, 8330
-recovered snap_scaffold_247-snap.3-T1, internal, 8439, 8571
-recovered snap_scaffold_247-snap.3-T1, internal, 8905, 8974
Valid prediction for Augustus_model.g39782.t1
Valid prediction for GlimmerHMM_glimmerT_60072-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for Augustus_model.g39781.t1
Valid prediction for snap_scaffold_247-snap.1-T1
Valid prediction for GlimmerHMM_glimmerT_60071-T1
Valid prediction for GlimmerHMM_glimmerT_60073-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 9126
-exon list size: 23


building trellis

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-found 3 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 3 predictions persist after filtering for low support