-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_2464

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 967, 1089
Sorry, prediction GlimmerHMM_glimmerT_61613-T1 fails validation.
(ATG)	 TC	500-631	GT	AGG
(AGT)	 AG	967-1089	GT	AGG
-recovered GlimmerHMM_glimmerT_61613-T1, initial, 500, 631
-recovered GlimmerHMM_glimmerT_61613-T1, internal, 967, 1089
Couldn't classify 71, 177
Couldn't classify 967, 1089
Sorry, prediction Augustus_model.g40900.t1 fails validation.
(GAA)	 AG	71-177	GT	AGG
(GGT)	 AG	416-631	GT	AGG
(AGT)	 AG	967-1089	GT	AGG
-recovered Augustus_model.g40900.t1, internal, 71, 177
-recovered Augustus_model.g40900.t1, internal, 416, 631
-recovered Augustus_model.g40900.t1, internal, 967, 1089
Couldn't classify 71, 177
Couldn't classify 967, 1089
Sorry, prediction snap_scaffold_2464-snap.1-T1 fails validation.
(GAA)	 AG	71-177	GT	AGG
(GGT)	 AG	416-631	GT	AGG
(AGT)	 AG	967-1089	GT	AGG
-recovered snap_scaffold_2464-snap.1-T1, internal, 71, 177
-recovered snap_scaffold_2464-snap.1-T1, internal, 416, 631
-recovered snap_scaffold_2464-snap.1-T1, internal, 967, 1089

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1273
-exon list size: 4


building trellis

16.7    
33.3    
50.0    
66.7    
83.3    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support