-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_2443

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 82, 132
Couldn't classify 480, 845
Sorry, prediction Augustus_model.g40893.t1 fails validation.
(CAG)	 AG	82-132	GT	TGG
(GAC)	 AG	237-315	GT	CGG
(GTG)	 AG	480-845	GT	AGG
-recovered Augustus_model.g40893.t1, internal, 82, 132
-recovered Augustus_model.g40893.t1, internal, 237, 315
-recovered Augustus_model.g40893.t1, internal, 480, 845
Couldn't classify 55, 132
Couldn't classify 480, 845
Sorry, prediction snap_scaffold_2443-snap.1-T1 fails validation.
(CTG)	 AG	55-132	GT	TGG
(GAC)	 AG	237-315	GT	CGG
(GTG)	 AG	480-845	GT	AGG
-recovered snap_scaffold_2443-snap.1-T1, internal, 55, 132
-recovered snap_scaffold_2443-snap.1-T1, internal, 237, 315
-recovered snap_scaffold_2443-snap.1-T1, internal, 480, 845
Couldn't classify 82, 132
Couldn't classify 480, 844
Sorry, prediction pasa_asmbl_33305.p1 fails validation.
(CAG)	 AG	82-132	GT	TGG
(GAC)	 AG	237-315	GT	CGG
(GTG)	 AG	480-844	GG	CAG
-recovered pasa_asmbl_33305.p1, internal, 82, 132
-recovered pasa_asmbl_33305.p1, internal, 237, 315
Couldn't classify 85, 132
Sorry, prediction GlimmerHMM_glimmerT_61608-T1 fails validation.
(ATC)	 AG	85-132	GT	TGG
(GAC)	 AG	237-315	GT	CGG
(GTG)	 AG	480-979	AG	AAA
-recovered GlimmerHMM_glimmerT_61608-T1, terminal, 480, 979
-recovered GlimmerHMM_glimmerT_61608-T1, internal, 85, 132
-recovered GlimmerHMM_glimmerT_61608-T1, internal, 237, 315

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1288
-exon list size: 9


building trellis

9.1    
18.2    
27.3    
36.4    
45.5    
54.5    
63.6    
72.7    
81.8    
90.9    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support