-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_2437

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 57, 155
Couldn't classify 945, 1035
Sorry, prediction snap_scaffold_2437-snap.1-T1 fails validation.
(GTG)	 AG	57-155	GT	AGG
(AAA)	 AG	421-549	GT	TGG
(GTG)	 AG	945-1035	GT	TGG
-recovered snap_scaffold_2437-snap.1-T1, internal, 57, 155
-recovered snap_scaffold_2437-snap.1-T1, internal, 421, 549
-recovered snap_scaffold_2437-snap.1-T1, internal, 945, 1035
Couldn't classify 421, 549
Sorry, prediction GlimmerHMM_glimmerT_61607-T1 fails validation.
(AAA)	 AG	421-549	GT	TGG
(GCA)	 AG	906-1073	CA	GAC
-recovered GlimmerHMM_glimmerT_61607-T1, terminal, 906, 1073
-recovered GlimmerHMM_glimmerT_61607-T1, internal, 421, 549
Couldn't classify 906, 1035
Sorry, prediction Augustus_model.g40891.t1 fails validation.
(ATG)	 AA	424-549	GT	TGG
(GCA)	 AG	906-1035	GT	TGG
-recovered Augustus_model.g40891.t1, initial, 424, 549
-recovered Augustus_model.g40891.t1, internal, 906, 1035

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1290
-exon list size: 7


building trellis

11.1    
22.2    
33.3    
44.4    
55.6    
66.7    
77.8    
88.9    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support