-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_2433

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 138, 219
Couldn't classify 869, 987
Sorry, prediction snap_scaffold_2433-snap.1-T1 fails validation.
(TGT)	 AG	138-219	GT	AGG
(GGC)	 AG	869-987	GT	AGG
-recovered snap_scaffold_2433-snap.1-T1, internal, 138, 219
-recovered snap_scaffold_2433-snap.1-T1, internal, 869, 987

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 387, 449
Sorry, prediction GlimmerHMM_glimmerT_61605-T1 fails validation.
(GGA)	 AG	387-449	GT	CGG
(GGG)	 AG	1051-1161	CA	GAC
-recovered GlimmerHMM_glimmerT_61605-T1, terminal, 1051, 1161
-recovered GlimmerHMM_glimmerT_61605-T1, internal, 387, 449
Couldn't classify 387, 449
Couldn't classify 1051, 1086
Sorry, prediction Augustus_model.g40889.t1 fails validation.
(GGA)	 AG	387-449	GT	CGG
(GGG)	 AG	1051-1086	GT	AGG
-recovered Augustus_model.g40889.t1, internal, 387, 449
-recovered Augustus_model.g40889.t1, internal, 1051, 1086

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1294
-exon list size: 9


building trellis

9.1    
18.2    
27.3    
36.4    
45.5    
54.5    
63.6    
72.7    
81.8    
90.9    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support