-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_243

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_60063-T1
Valid prediction for snap_scaffold_243-snap.3-T1
Couldn't classify 96, 376
Sorry, prediction snap_scaffold_243-snap.1-T1 fails validation.
(AGA)	 AG	96-376	GT	CTG
(GGC)	 AG	2833-3181	GT	AGG
(GTG)	 AG	3613-3698	GG	GAG
-recovered snap_scaffold_243-snap.1-T1, terminal, 3613, 3698
-recovered snap_scaffold_243-snap.1-T1, internal, 96, 376
-recovered snap_scaffold_243-snap.1-T1, internal, 2833, 3181

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 6022, 6350
Sorry, prediction snap_scaffold_243-snap.2-T1 fails validation.
(ATG)	 TC	2842-2851	GT	TGG
(GTA)	 AG	3252-3547	GT	AGG
(GGC)	 AG	4563-4662	GT	GCG
(AAA)	 AG	4729-5014	GT	GAG
(CTG)	 AG	5739-5808	GT	GGG
(CCC)	 AG	6022-6350	GT	GGG
-recovered snap_scaffold_243-snap.2-T1, initial, 2842, 2851
-recovered snap_scaffold_243-snap.2-T1, internal, 3252, 3547
-recovered snap_scaffold_243-snap.2-T1, internal, 4563, 4662
-recovered snap_scaffold_243-snap.2-T1, internal, 4729, 5014
-recovered snap_scaffold_243-snap.2-T1, internal, 5739, 5808
-recovered snap_scaffold_243-snap.2-T1, internal, 6022, 6350
Couldn't classify 147, 235
Sorry, prediction snap_scaffold_243-snap.4-T1 fails validation.
(GGT)	 AG	147-235	GT	AGG
(AGA)	 AG	2217-2672	CC	GAC
-recovered snap_scaffold_243-snap.4-T1, terminal, 2217, 2672
-recovered snap_scaffold_243-snap.4-T1, internal, 147, 235
Couldn't classify 147, 266
Sorry, prediction Augustus_model.g39777.t1 fails validation.
(GGT)	 AG	147-266	GT	AGG
(AGA)	 AG	758-851	GT	ATG
(TGT)	 AG	1292-1388	GG	GAG
-recovered Augustus_model.g39777.t1, terminal, 1292, 1388
-recovered Augustus_model.g39777.t1, internal, 147, 266
-recovered Augustus_model.g39777.t1, internal, 758, 851
Valid prediction for Augustus_model.g39776.t1
Couldn't classify 120, 235
Sorry, prediction GlimmerHMM_glimmerT_60064-T1 fails validation.
(ACG)	 AG	120-235	GT	AGG
(AGA)	 AG	2217-2672	CC	GAC
-recovered GlimmerHMM_glimmerT_60064-T1, terminal, 2217, 2672
-recovered GlimmerHMM_glimmerT_60064-T1, internal, 120, 235

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 3698, rend_intergenic: 2815  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 6323, rend_intergenic: 4316  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 6960, rend_intergenic: 6493  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 9164
-exon list size: 36


building trellis

2.6    
5.3    
7.9    
10.5    
13.2    
15.8    
18.4    
21.1    
23.7    
26.3    
28.9    
31.6    
34.2    
36.8    
39.5    
42.1    
44.7    
47.4    
50.0    
52.6    
55.3    
57.9    
60.5    
63.2    
65.8    
68.4    
71.1    
73.7    
76.3    
78.9    
81.6    
84.2    
86.8    
89.5    
92.1    
94.7    
97.4    
-found 2 predictions from path traversal
Error with prediction: snap lend_intergenic: 3698, rend_intergenic: 2815  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 6323, rend_intergenic: 4316  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 6960, rend_intergenic: 6493  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support