-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_2418

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 959, 1142
Sorry, prediction GlimmerHMM_glimmerT_61600-T1 fails validation.
(ATG)	 GT	521-577	GT	AGG
(CAC)	 AG	959-1142	GT	TGG
-recovered GlimmerHMM_glimmerT_61600-T1, initial, 521, 577
-recovered GlimmerHMM_glimmerT_61600-T1, internal, 959, 1142
Couldn't classify 494, 577
Couldn't classify 1028, 1142
Sorry, prediction snap_scaffold_2418-snap.1-T1 fails validation.
(GGC)	 AG	494-577	GT	AGG
(TAC)	 AG	1028-1142	GT	TGG
-recovered snap_scaffold_2418-snap.1-T1, internal, 494, 577
-recovered snap_scaffold_2418-snap.1-T1, internal, 1028, 1142

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1305
-exon list size: 7


building trellis

11.1    
22.2    
33.3    
44.4    
55.6    
66.7    
77.8    
88.9    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support