-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_2416

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 58, 115
Couldn't classify 1078, 1136
Sorry, prediction snap_scaffold_2416-snap.1-T1 fails validation.
(TCG)	 AG	58-115	GT	GGG
(GAC)	 AG	293-483	GT	TGG
(AAC)	 AG	1078-1136	GT	AGG
-recovered snap_scaffold_2416-snap.1-T1, internal, 58, 115
-recovered snap_scaffold_2416-snap.1-T1, internal, 293, 483
-recovered snap_scaffold_2416-snap.1-T1, internal, 1078, 1136

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1306
-exon list size: 5


building trellis

14.3    
28.6    
42.9    
57.1    
71.4    
85.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support