-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_241

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for Augustus_model.g39773.t1
Valid prediction for snap_scaffold_241-snap.3-T1
Couldn't classify 8357, 8710
Sorry, prediction snap_scaffold_241-snap.4-T1 fails validation.
(ATG)	 AA	7188-7335	GT	GAG
(TCG)	 AG	8357-8710	GT	AGG
-recovered snap_scaffold_241-snap.4-T1, initial, 7188, 7335
-recovered snap_scaffold_241-snap.4-T1, internal, 8357, 8710
Valid prediction for GlimmerHMM_glimmerT_60060-T1
Valid prediction for Augustus_model.g39774.t1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for Augustus_model.g39772.t1
Couldn't classify 518, 732
Sorry, prediction snap_scaffold_241-snap.2-T1 fails validation.
(GAG)	 AG	518-732	GT	AGG
(TCA)	 AG	3265-3382	GT	CGG
(GTT)	 AG	3478-3687	GT	AGG
(GAA)	 AG	5671-5816	CA	AGC
-recovered snap_scaffold_241-snap.2-T1, terminal, 5671, 5816
-recovered snap_scaffold_241-snap.2-T1, internal, 518, 732
-recovered snap_scaffold_241-snap.2-T1, internal, 3265, 3382
-recovered snap_scaffold_241-snap.2-T1, internal, 3478, 3687
Couldn't classify 518, 732
Sorry, prediction Augustus_model.g39775.t1 fails validation.
(GAG)	 AG	518-732	GT	AGG
(AGC)	 AG	1451-1498	AG	AAA
-recovered Augustus_model.g39775.t1, terminal, 1451, 1498
-recovered Augustus_model.g39775.t1, internal, 518, 732
Couldn't classify 518, 732
Sorry, prediction GlimmerHMM_glimmerT_60061-T1 fails validation.
(GAG)	 AG	518-732	GT	AGG
(GAG)	 AG	2359-2505	AG	AAA
-recovered GlimmerHMM_glimmerT_60061-T1, terminal, 2359, 2505
-recovered GlimmerHMM_glimmerT_60061-T1, internal, 518, 732
Valid prediction for GlimmerHMM_glimmerT_60059-T1
Valid prediction for snap_scaffold_241-snap.1-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 8669, rend_intergenic: 3455  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 9186
-exon list size: 30


building trellis

3.1    
6.2    
9.4    
12.5    
15.6    
18.8    
21.9    
25.0    
28.1    
31.2    
34.4    
37.5    
40.6    
43.8    
46.9    
50.0    
53.1    
56.2    
59.4    
62.5    
65.6    
68.8    
71.9    
75.0    
78.1    
81.2    
84.4    
87.5    
90.6    
93.8    
96.9    
-found 4 predictions from path traversal
Error with prediction: snap lend_intergenic: 8669, rend_intergenic: 3455  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 3 predictions persist after filtering for low support